Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,364,346 – 16,364,457 |
Length | 111 |
Max. P | 0.971699 |
Location | 16,364,346 – 16,364,457 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 93.77 |
Mean single sequence MFE | -27.00 |
Consensus MFE | -23.04 |
Energy contribution | -23.29 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -3.11 |
Structure conservation index | 0.85 |
SVM decision value | 1.68 |
SVM RNA-class probability | 0.971699 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16364346 111 + 22224390 CAGAAGUCGCGAAAGCAACACAAAUAGCCAAAUAGCCACACGAAAGCCACACAAUCGCACACGAAUGACAGCUAGUGCGUUUUAUAAACGAAAGUUUAUAGAUUUUGGCCA .....((.((....)).)).......((((((....(.(((...(((....((.(((....))).))...))).))).).(((((((((....))))))))).)))))).. ( -29.60) >DroSec_CAF1 37152 103 + 1 CAGAAGUCGCGAAAGCAACACAAAU--------AGCCACACGAAAGCCACACAAUCGCACACGAAAGACAGCAAGUGCGUUUUAUAAACGAAAGUUUAUAGAUUUUGGCCA .....((.((....)).))......--------.((((..(....).........(((((..............))))).(((((((((....)))))))))...)))).. ( -26.44) >DroSim_CAF1 25507 103 + 1 CAGAAGUCGCGAAAGCAACACAAAU--------AGCCACACGAAAGCCACACAAUCGCACACGAAUGACAGCAAGUGCGUUUUAUAAACGAAAGUUUAUAGAUUUUGGCCA .....((.((....)).))......--------.((((..(....).........(((((..............))))).(((((((((....)))))))))...)))).. ( -26.44) >DroEre_CAF1 22861 103 + 1 CAGAAGUCGCGAAACCAAGACAAAU--------AGCCACACGAAAGCCACACAAUCGCACACGAGUGACAGCUAGUGCGUUUUAUAAACGAAAGUUUAUAGAUUUUGGCCA .....(((..........)))....--------.((((..(....).........(((((...(((....))).))))).(((((((((....)))))))))...)))).. ( -25.50) >consensus CAGAAGUCGCGAAAGCAACACAAAU________AGCCACACGAAAGCCACACAAUCGCACACGAAUGACAGCAAGUGCGUUUUAUAAACGAAAGUUUAUAGAUUUUGGCCA ........((....))..................((((..(....).........(((((..............))))).(((((((((....)))))))))...)))).. (-23.04 = -23.29 + 0.25)
Location | 16,364,346 – 16,364,457 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 93.77 |
Mean single sequence MFE | -29.70 |
Consensus MFE | -24.49 |
Energy contribution | -24.73 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.05 |
Structure conservation index | 0.82 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.807499 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16364346 111 - 22224390 UGGCCAAAAUCUAUAAACUUUCGUUUAUAAAACGCACUAGCUGUCAUUCGUGUGCGAUUGUGUGGCUUUCGUGUGGCUAUUUGGCUAUUUGUGUUGCUUUCGCGACUUCUG ((((((((...(((((((....)))))))...(((((.(((..(((.(((....))).)).)..)))...)))))....)))))))).....(((((....)))))..... ( -34.90) >DroSec_CAF1 37152 103 - 1 UGGCCAAAAUCUAUAAACUUUCGUUUAUAAAACGCACUUGCUGUCUUUCGUGUGCGAUUGUGUGGCUUUCGUGUGGCU--------AUUUGUGUUGCUUUCGCGACUUCUG .(((((.(((((((((((....)))))))....((((.((........)).))))))))...))))).(((((.(((.--------.........)))..)))))...... ( -26.80) >DroSim_CAF1 25507 103 - 1 UGGCCAAAAUCUAUAAACUUUCGUUUAUAAAACGCACUUGCUGUCAUUCGUGUGCGAUUGUGUGGCUUUCGUGUGGCU--------AUUUGUGUUGCUUUCGCGACUUCUG (((((......(((((((....)))))))....((((..((..(((.(((....))).)).)..))....))))))))--------).....(((((....)))))..... ( -27.70) >DroEre_CAF1 22861 103 - 1 UGGCCAAAAUCUAUAAACUUUCGUUUAUAAAACGCACUAGCUGUCACUCGUGUGCGAUUGUGUGGCUUUCGUGUGGCU--------AUUUGUCUUGGUUUCGCGACUUCUG .(((((.(((((((((((....)))))))...(((((.((......)).))))).))))...))))).(((((..(((--------(.......))))..)))))...... ( -29.40) >consensus UGGCCAAAAUCUAUAAACUUUCGUUUAUAAAACGCACUAGCUGUCAUUCGUGUGCGAUUGUGUGGCUUUCGUGUGGCU________AUUUGUGUUGCUUUCGCGACUUCUG .(((((.(((((((((((....)))))))....((((..............))))))))...))))).(((((.(((..................)))..)))))...... (-24.49 = -24.73 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:12 2006