Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,172,274 – 16,172,392 |
Length | 118 |
Max. P | 0.662156 |
Location | 16,172,274 – 16,172,392 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.46 |
Mean single sequence MFE | -30.42 |
Consensus MFE | -23.10 |
Energy contribution | -22.62 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.13 |
Mean z-score | -1.70 |
Structure conservation index | 0.76 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.662156 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16172274 118 + 22224390 AAAAAACGAAAUCUUGUGGAGAUUCUGUGAAAUUUGAGGAUUUUUUCGUGCGAUUUUCAUGCCAGCCGUGGGCAA--AAUGUCUGCAGAAGAUUUCUGUGAUUGGAAAAACCAAAGCAUA .......((((((((.((.((((...((((((.(((.(((....)))...))).))))))(((.......)))..--...)))).)).))))))))(((..((((.....)))).))).. ( -32.20) >DroSec_CAF1 12199 119 + 1 -AAGAACGAAAUCUUGCGGAGAUUCUGUGAAAUUUGAGGAUUUUUUCGAGCGAUUUUCAUGCCAGCCGUGGGCAAAAAAUGUCUGCAGAAGAUUUCUGUGAUUGGAAAAACCAAAGCAUA -......(((((((((((((.(((..((((((.(((.(((....)))...))).))))))(((.......)))....))).))))))..)))))))(((..((((.....)))).))).. ( -32.00) >DroSim_CAF1 12567 119 + 1 -AAGAACGAAAUCUUGCGGAGAUUCUGUGAAAUUUGAGGAUUUUUUCGAGCGAUUUUCAUGCCAGCCGUGGGCAAAAAAUGUCUGCAGAAGAUUUCUGUGAUUGGAAAAACCAAAGCAUA -......(((((((((((((.(((..((((((.(((.(((....)))...))).))))))(((.......)))....))).))))))..)))))))(((..((((.....)))).))).. ( -32.00) >DroEre_CAF1 12632 113 + 1 -A-AUACGAAAUCUCGU-GAGAUUCUGUGAAACUUAAGGAUUU-UUCCAGCGAUUUCCAUACCAGCCGUGGGCAA--AAUGUCUGCAGAAGAUUUCUGUGAUUGGAA-AACCAAAGCACA -.-....(((((((((.-(((((((((.((((..........)-)))))).))))))).........(..(((..--...)))..).).))))))).(((.((((..-..))))..))). ( -26.70) >DroYak_CAF1 13157 113 + 1 -A-AUACGAAAUCUCGU-GAGAUUCUGUGAAAUUUAGGGAUUU-UUCAAGCGAUUUCCAUGCCAGGCGUGGGCAA--AAUGUCUGCAGAAGAUUUCUGUGAUUGGCA-AACCAAAGCACA -.-....((((((((..-..))((((((((.((((.((((...-.((....)).)))).((((.......)))))--))).)).)))))))))))).(((.((((..-..))))..))). ( -29.20) >consensus _AAAAACGAAAUCUUGUGGAGAUUCUGUGAAAUUUGAGGAUUUUUUCGAGCGAUUUUCAUGCCAGCCGUGGGCAA__AAUGUCUGCAGAAGAUUUCUGUGAUUGGAAAAACCAAAGCAUA .......((((((((((.((((((((..........)))))))).....))))..............(..((((.....))))..)....))))))((((.((((.....))))..)))) (-23.10 = -22.62 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:14 2006