Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,069,849 – 16,069,943 |
Length | 94 |
Max. P | 0.944871 |
Location | 16,069,849 – 16,069,943 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.69 |
Mean single sequence MFE | -30.23 |
Consensus MFE | -17.74 |
Energy contribution | -17.80 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.06 |
Mean z-score | -2.23 |
Structure conservation index | 0.59 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.944871 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16069849 94 + 22224390 A-------------------AAACUCUAUG------GGGGCGCUUGAAUUUUCCAGGAGC-AAUCCAAGUGCCUCAAAAGGCAAGCGGAUAAAUAAAAAGGCCAUUGAAAAGCCCACCGA .-------------------........((------(((((((((..(((((((.(((..-..)))...(((((....)))))...))).))))....))))...(....))))).))). ( -27.50) >DroSec_CAF1 15691 94 + 1 A-------------------AAGCUCAAUG------GGGGCGCUUGAAUUUUCCAGGAGC-AGUCCAAGUGCCUCAAAAGGCAAGCGCAGAAAUAAAAAGGCCAUUGAAAAGCCCACCGA .-------------------..((((((((------(..(((((((..((((..(((.((-.......)).))).))))..)))))))(....).......)))))))...))....... ( -25.10) >DroEre_CAF1 15305 99 + 1 AAUGGGUGCGGAG--------AAUACU----------GGGCGGUUGAAUUUUCCAGGAGC-ACUCCAAGUGCCCCAAAAGGCAAGCGGAGAAAUAAAAAGGCCAUUGAA-AGCCCACC-A ....((((.((..--------.....(----------((.(..((...((((((.(((..-..)))...((((......))))...))))))...))..).))).....-..))))))-. ( -29.94) >DroYak_CAF1 13318 119 + 1 AAAUGCUGCGGAGGGGGGGGAAAUUCUAUGGCGGGGGGAGCGGUUGAGUUUUCCAGGAGCCAGUCCAAGUGCCUCAAGAGGCAAGCGGAGAAAUAAAAAGGCCAUUGAAAAGCCCACC-A ............((...(((...(((.(((((..((..(((......)))..)).........(((...(((((....)))))...)))...........))))).)))...))).))-. ( -38.40) >consensus A___________________AAACUCUAUG______GGGGCGCUUGAAUUUUCCAGGAGC_AGUCCAAGUGCCUCAAAAGGCAAGCGGAGAAAUAAAAAGGCCAUUGAAAAGCCCACC_A .....................................((((..((.(((...((.(((.....)))...((((......))))................))..))).))..))))..... (-17.74 = -17.80 + 0.06)
Location | 16,069,849 – 16,069,943 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.69 |
Mean single sequence MFE | -27.53 |
Consensus MFE | -19.12 |
Energy contribution | -19.00 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.11 |
Mean z-score | -1.63 |
Structure conservation index | 0.69 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.727861 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16069849 94 - 22224390 UCGGUGGGCUUUUCAAUGGCCUUUUUAUUUAUCCGCUUGCCUUUUGAGGCACUUGGAUU-GCUCCUGGAAAAUUCAAGCGCCCC------CAUAGAGUUU-------------------U ..((.((((.(((.(((..((.........(((((..(((((....)))))..))))).-......))...))).))).)))))------).........-------------------. ( -26.49) >DroSec_CAF1 15691 94 - 1 UCGGUGGGCUUUUCAAUGGCCUUUUUAUUUCUGCGCUUGCCUUUUGAGGCACUUGGACU-GCUCCUGGAAAAUUCAAGCGCCCC------CAUUGAGCUU-------------------U ((((((((((.......))))...........((((((((((....)))).((.(((..-..))).)).......))))))...------))))))....-------------------. ( -27.20) >DroEre_CAF1 15305 99 - 1 U-GGUGGGCU-UUCAAUGGCCUUUUUAUUUCUCCGCUUGCCUUUUGGGGCACUUGGAGU-GCUCCUGGAAAAUUCAACCGCCC----------AGUAUU--------CUCCGCACCCAUU .-((((((((-......)))).........(((((..(((((....)))))..))))).-....((((.............))----------))....--------.....)))).... ( -27.02) >DroYak_CAF1 13318 119 - 1 U-GGUGGGCUUUUCAAUGGCCUUUUUAUUUCUCCGCUUGCCUCUUGAGGCACUUGGACUGGCUCCUGGAAAACUCAACCGCUCCCCCCGCCAUAGAAUUUCCCCCCCCUCCGCAGCAUUU .-((.(((...(((.(((((...........((((..(((((....)))))..))))..(((...(((.....)))...)))......))))).)))...)))))............... ( -29.40) >consensus U_GGUGGGCUUUUCAAUGGCCUUUUUAUUUCUCCGCUUGCCUUUUGAGGCACUUGGACU_GCUCCUGGAAAAUUCAACCGCCCC______CAUAGAAUUU___________________U ..((((((((.......))))..........(((...(((((....)))))...(((.....))).))).........))))...................................... (-19.12 = -19.00 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:04 2006