Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,053,048 – 16,053,161 |
Length | 113 |
Max. P | 0.751675 |
Location | 16,053,048 – 16,053,161 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 91.38 |
Mean single sequence MFE | -23.40 |
Consensus MFE | -20.84 |
Energy contribution | -20.65 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.05 |
Mean z-score | -1.56 |
Structure conservation index | 0.89 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.751675 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16053048 113 - 22224390 GGAAAAACGAAAGUGUUGACUAGCACUGUCCAACAUGAAAAAAAAAAAAAUGGGGGGGCGACAUCGAGAUGACCCCAGAGAAGAUAUUUCCAUUCGUUCCAAACAAUAUUAAA--- (((...(((((.((((((((.......)).))))))((((..........(((((...((....))......))))).........))))..)))))))).............--- ( -23.41) >DroSec_CAF1 7312 107 - 1 GGAAAAACGAAAGUGUUGACUAGCACUGUCCAACAUGAAAAAAAGGA-----GGGGGGCGACAUCGAGAUGACCCCAGAGAAGAUAUUUCCAUUCGUUCCAAACAAUAUUAA---- (((...(((((.((((((((.......)).))))))........(((-----((((((...(((....))).))))..........))))).))))))))............---- ( -22.50) >DroSim_CAF1 4010 108 - 1 GGAAAAACGAAAGUGUUGACUAGCACUGUCCAACAUGGAAAAAAAG------GGGGGGCGACAUCGAGAUGACCCCAGAGAAGAUAUUUCCAUUCGUUCCAAACAAUAUUAAAG-- (((...(((((.((((((((.......)).))))))(((((.....------.((((....(((....))).))))..........))))).))))))))..............-- ( -24.29) >DroYak_CAF1 3624 110 - 1 GGAAAAACGAAAGUGUUGACUAGCACUGUCCAACAUGAAAAAAAAA------GGGGGGCGACAUCGAGAUGACCCCCGACAAGACAUUUCCAUUCGUUUCAAACAAAAUUAAAAAA ....(((((((.((((((((.......)).))))))..........------(((((....(((....))).)))))...............)))))))................. ( -23.40) >consensus GGAAAAACGAAAGUGUUGACUAGCACUGUCCAACAUGAAAAAAAAA______GGGGGGCGACAUCGAGAUGACCCCAGAGAAGAUAUUUCCAUUCGUUCCAAACAAUAUUAAA___ (((...(((((.((((((((.......)).))))))................((((..((....))......))))................))))))))................ (-20.84 = -20.65 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:57 2006