Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,794,361 – 1,794,461 |
Length | 100 |
Max. P | 0.775569 |
Location | 1,794,361 – 1,794,461 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 96.66 |
Mean single sequence MFE | -14.33 |
Consensus MFE | -13.81 |
Energy contribution | -13.93 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.79 |
Structure conservation index | 0.96 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.775569 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1794361 100 + 22224390 AUUAAUUAGGGAUAUGUCUGUAAAACAAUAUGUAUAUCAGUCACUAUCUCAACUUCUGAUUCAUAUGUUAACUUUAAACACCUCCUUUAAAAAAAAGACU .......(((((..(((...((((..(((((((..(((((...............)))))..)))))))...)))).)))..)))))............. ( -13.86) >DroSec_CAF1 2848 99 + 1 AUUAAUAAGGGAUAUGUCUAUAAAACAAUAUGUAUAUCAGUCACUAUCUCAACUUCUGAUUCAUAUGUUAACUUUAAACACCUCCUUUUAA-AAAAGACU ......((((((..(((.((......(((((((..(((((...............)))))..))))))).....)).)))..))))))...-........ ( -14.16) >DroSim_CAF1 2875 99 + 1 AUUAAUAAGGGAUAUGUCUAUAAAACAAUAUGUAUAUCAGUCACUAUCUCAACUUCUGAUUCAUAUGUUAACUUUAAACACUUCCUUUUAA-AAAAGACU ......((((((..(((.((......(((((((..(((((...............)))))..))))))).....)).)))..))))))...-........ ( -14.96) >consensus AUUAAUAAGGGAUAUGUCUAUAAAACAAUAUGUAUAUCAGUCACUAUCUCAACUUCUGAUUCAUAUGUUAACUUUAAACACCUCCUUUUAA_AAAAGACU ......((((((..(((.((......(((((((..(((((...............)))))..))))))).....)).)))..))))))............ (-13.81 = -13.93 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:00 2006