Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,032,395 – 16,032,498 |
Length | 103 |
Max. P | 0.879583 |
Location | 16,032,395 – 16,032,498 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 91.93 |
Mean single sequence MFE | -23.77 |
Consensus MFE | -23.02 |
Energy contribution | -23.13 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.80 |
Structure conservation index | 0.97 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.879583 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16032395 103 - 22224390 UCC------AACUUCAGAUCCAACUAAAAAAGAUCCCAGCUUCGAUGGCUUUAAUUGAAGAUGCGUGCGCGCAUACUUAAAUCGCGCAAACAGCACUUUGAUCUUAAAA ...------....................((((((..(((((((((.......))))))).(((.((((((.((......))))))))....)))))..)))))).... ( -24.20) >DroEre_CAF1 100183 101 - 1 -------UCAACUUCAGAUCCAACUAAG-GAGAUCCCAGCUUCGAUGGCUUUAAUUGAAGAUGCGUGCGCGCAUACUUAAAUCGCGCAAACAGCACUUUGAUCUUAAAA -------....(((.((......)))))-((((((..(((((((((.......))))))).(((.((((((.((......))))))))....)))))..)))))).... ( -24.80) >DroYak_CAF1 82758 108 - 1 UCCAACUUCAACUUCAGAUCCAACUAAG-AAGAUCCCAGCGUCGAUGGCUUUAAUUGAAGAUGCGUGCGCGCAUACUUAAAUCGCGCAAACAGCACUUUGAUCUUAAAA ............................-(((((((((.......)))........((((.(((.((((((.((......))))))))....))))))))))))).... ( -22.30) >consensus UCC____UCAACUUCAGAUCCAACUAAG_AAGAUCCCAGCUUCGAUGGCUUUAAUUGAAGAUGCGUGCGCGCAUACUUAAAUCGCGCAAACAGCACUUUGAUCUUAAAA .............................((((((..(((((((((.......))))))).(((.((((((.((......))))))))....)))))..)))))).... (-23.02 = -23.13 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:27 2006