Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,029,522 – 16,029,642 |
Length | 120 |
Max. P | 0.921605 |
Location | 16,029,522 – 16,029,642 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.10 |
Mean single sequence MFE | -35.93 |
Consensus MFE | -34.72 |
Energy contribution | -34.83 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -2.06 |
Structure conservation index | 0.97 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.921605 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16029522 120 + 22224390 AUUGAUUUUACACCCAUGUGUCCAAAGAGUCACGGUCUGGAGUAGCCGACCGAUUCGGAUUCGCUGGAAAUAAUGUCCAGUCGAUCCGUUUGCAAAUAUGUAUAUCUGGCUCAAUAAUAA .........((((....)))).....(((((((((((.((.....)))))))...((((((.((((((.......)))))).))))))..((((....))))....))))))........ ( -35.50) >DroEre_CAF1 97483 116 + 1 AUUGAUUCUACACCCAUGUGUCCAAAGAGUCACGGUCUGGAGUAGCCGACCGAUGCGGAUUCGCUGGAAAUAGUGUCCAGUCGAGCCGUUUGCAAAUA----UAUCUGGCUCAAUAAUAG .........((((....)))).....(((((((((((.((.....)))))))..((((.(((((((((.......))))).)))))))).........----....))))))........ ( -35.00) >DroYak_CAF1 80209 116 + 1 AUUGAUUCUACACCCAUGUGUCCAAAGAGUCACGGUCUGGAGUAGCCGACCGAUUCGGGUUCGCUGGAAAUAGUGUCCAGUCGACCCGUUUGCAAAUA----UAUCUGGCUCAAUAAUAA .........((((....)))).....(((((((((((.((.....)))))))...((((((.((((((.......)))))).))))))..........----....))))))........ ( -37.30) >consensus AUUGAUUCUACACCCAUGUGUCCAAAGAGUCACGGUCUGGAGUAGCCGACCGAUUCGGAUUCGCUGGAAAUAGUGUCCAGUCGACCCGUUUGCAAAUA____UAUCUGGCUCAAUAAUAA .........((((....)))).....(((((((((((.((.....)))))))...((((((.((((((.......)))))).))))))..................))))))........ (-34.72 = -34.83 + 0.11)
Location | 16,029,522 – 16,029,642 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.10 |
Mean single sequence MFE | -33.00 |
Consensus MFE | -31.85 |
Energy contribution | -31.97 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -1.48 |
Structure conservation index | 0.97 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.605852 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16029522 120 - 22224390 UUAUUAUUGAGCCAGAUAUACAUAUUUGCAAACGGAUCGACUGGACAUUAUUUCCAGCGAAUCCGAAUCGGUCGGCUACUCCAGACCGUGACUCUUUGGACACAUGGGUGUAAAAUCAAU .....(((((.(((((................(((((((.(((((.......))))))).)))))...(((((((.....)).)))))......)))))((((....))))....))))) ( -32.70) >DroEre_CAF1 97483 116 - 1 CUAUUAUUGAGCCAGAUA----UAUUUGCAAACGGCUCGACUGGACACUAUUUCCAGCGAAUCCGCAUCGGUCGGCUACUCCAGACCGUGACUCUUUGGACACAUGGGUGUAGAAUCAAU ......(((((((.....----...........)))))))(((((.......))))).((.((..((((((((((.....)).))))(((.((....)).)))...))))..)).))... ( -31.59) >DroYak_CAF1 80209 116 - 1 UUAUUAUUGAGCCAGAUA----UAUUUGCAAACGGGUCGACUGGACACUAUUUCCAGCGAACCCGAAUCGGUCGGCUACUCCAGACCGUGACUCUUUGGACACAUGGGUGUAGAAUCAAU .....(((((.(((((..----..........(((((((.(((((.......))))))).)))))...(((((((.....)).)))))......)))))((((....))))....))))) ( -34.70) >consensus UUAUUAUUGAGCCAGAUA____UAUUUGCAAACGGAUCGACUGGACACUAUUUCCAGCGAAUCCGAAUCGGUCGGCUACUCCAGACCGUGACUCUUUGGACACAUGGGUGUAGAAUCAAU .....(((((.(((((................(((((((.(((((.......))))))).)))))...(((((((.....)).)))))......)))))((((....))))....))))) (-31.85 = -31.97 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:23 2006