Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,785,056 – 1,785,151 |
Length | 95 |
Max. P | 0.636572 |
Location | 1,785,056 – 1,785,151 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 90.40 |
Mean single sequence MFE | -20.55 |
Consensus MFE | -15.59 |
Energy contribution | -15.03 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.15 |
Mean z-score | -1.71 |
Structure conservation index | 0.76 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.636572 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1785056 95 - 22224390 AGUUGAAUUAGAGCGGGUGCGAGAUGCAUGGUUUGGGUGUCGUGCACAGAUAUGGAAAAGAAACAAUACCGAAU--------AGUUCCAAUCAAUAAUUAAAA ....((((((...((((..(((.((.((.....)).)).)))..).((....))..............)))..)--------)))))................ ( -20.70) >DroSec_CAF1 1063 95 - 1 AGUUGAAUUAGAGCGGGUGCGAGAUGCAUGGUUUGGGUGUCGUGCACAGAUAUGGAAAAGAAACAAUACCGAAU--------AGUUCCAAUCAAUAAUUAAAA ....((((((...((((..(((.((.((.....)).)).)))..).((....))..............)))..)--------)))))................ ( -20.70) >DroSim_CAF1 1085 95 - 1 AGUUGAAUUAGAGCGGGUGCGAGAUGCAUGGUUUGGGUGUCGUGCACAGAUAUGGAAAAGAAACAAUACCGAAU--------AGUUCCAAUCAAUAAUUAAAA ....((((((...((((..(((.((.((.....)).)).)))..).((....))..............)))..)--------)))))................ ( -20.70) >DroYak_CAF1 1125 103 - 1 AGUUGAAUUAGAGCGGGUGCGAGAUACAAGGUGUGGGUGUCGUGUACAGAUAUGGAAAAGAAACAUAAGCGAAAGAAAUUGGAUUUCCAAUCAGUAAUAAAAA .......(((..((..(((((.(((((.........))))).))))).(((.((((((.....((....(....)....))..))))))))).))..)))... ( -20.10) >consensus AGUUGAAUUAGAGCGGGUGCGAGAUGCAUGGUUUGGGUGUCGUGCACAGAUAUGGAAAAGAAACAAUACCGAAU________AGUUCCAAUCAAUAAUUAAAA .(((((..........(((((.(((((.........))))).))))).....(((((...........................))))).)))))........ (-15.59 = -15.03 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:59 2006