Locus 6368

Sequence ID X_DroMel_CAF1
Location 16,018,313 – 16,018,421
Length 108
Max. P 0.693486
window10389

overview

Window 9

Location 16,018,313 – 16,018,421
Length 108
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 76.55
Mean single sequence MFE -20.72
Consensus MFE -3.58
Energy contribution -3.82
Covariance contribution 0.24
Combinations/Pair 1.09
Mean z-score -1.68
Structure conservation index 0.17
SVM decision value 0.33
SVM RNA-class probability 0.693486
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16018313 108 + 22224390
UAUUCAAGAAGUA-----------UGCAUAUAAAUCUCAUUUU-GCUAAGCCAUUUCCGACUUAUAUGUAUACUGACCUCCUUUCGAGAGGACUCACCCUAAAACUGAGAAGACGAAAGU
.........((((-----------(((((((((.((.......-((...)).......)).)))))))))))))..(((((....).)))).((((.........))))...((....)) ( -22.44)
>DroSec_CAF1 86110 106 + 1
UAAUCAAAAAGUA-----------UGCAUAUAAAUCUCAUUUUCGCUAAGCCAUUUCCGACUUAUAUGUAUACUGACCUCCUUUCGA--GGACUCACCCUAA-ACGGUGAAGACGAAAGU
.........((((-----------(((((((((.((........((...)).......)).)))))))))))))..((((.....))--))..(((((....-..)))))..((....)) ( -25.76)
>DroSim_CAF1 80172 106 + 1
UAUUCAAGUUGUA-----------UGCAUAUAAAUCUAAUUUUCGCUAAGCCAUUUCCGACUUAUAUGUAUACUGACCUCCUUUCGA--GGACUCACCCCAA-AUGGUGAAGACGAAAGU
..........(((-----------(((((((((.((........((...)).......)).))))))))))))...((((.....))--))..(((((....-..)))))..((....)) ( -24.26)
>DroEre_CAF1 84214 116 + 1
UAUUCAACAAUUAGGCUAUACUCGUGCAUAUAAAACUCAUUUU-GCCAACCCAUUUCAGAGCCACAUAUACACUGACCUCCUUAUUA--GGACUCACCCUAA-ACUCUGAAGACGAGAGU
....................((((((((..............)-)).......((((((((...((.......)).........(((--((......)))))-.)))))))))))))... ( -19.14)
>DroYak_CAF1 69443 88 + 1
----------------------------UAUGAAACUCACUUU-GACAAGCCAUUUCAGAGUUAUGUAUAUACUGACCUCCUUAUUA--GGACUCACCCUAA-ACUGUGAAGACGAAAGU
----------------------------......((..(((((-((.........)))))))...))...........((((....)--))).((((.....-...))))..((....)) ( -12.00)
>consensus
UAUUCAAGAAGUA___________UGCAUAUAAAUCUCAUUUU_GCUAAGCCAUUUCCGACUUAUAUGUAUACUGACCUCCUUUCGA__GGACUCACCCUAA_ACUGUGAAGACGAAAGU
.....................................................((((.....................(((........))).((((.........))))....)))).. ( -3.58 =  -3.82 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:52 2006