Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,010,601 – 16,010,720 |
Length | 119 |
Max. P | 0.756242 |
Location | 16,010,601 – 16,010,720 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.61 |
Mean single sequence MFE | -21.14 |
Consensus MFE | -16.46 |
Energy contribution | -16.74 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.08 |
Mean z-score | -1.73 |
Structure conservation index | 0.78 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.756242 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16010601 119 + 22224390 CACAAACAAAUGCAUUUUGGGCAAAGAUGCUGAAUGGUAGUUACCAUUUACCAUUUACCAUUUACCAUUUACCAUUUACCAUUUACCAGUUACCUGAUCUUUGAGAC-AACCGCAACCCA ..........(((...(((..((((((((.((((((((((.......)))))))))).)...........................(((....))))))))))...)-))..)))..... ( -22.10) >DroSec_CAF1 78526 98 + 1 CACAAACAAAUGCAUUUUGGGCAAAGAUGCUGAAUGGUAGUUACCAUUUACCAUUUACCAUUUACCA---------------------GUUACCUGAUCUUUGAGAC-AACCGCAACCCA ..........(((...(((..((((((((.((((((((((.......)))))))))).)......((---------------------(....))))))))))...)-))..)))..... ( -22.10) >DroSim_CAF1 73024 99 + 1 CACAAACAAAUGCAUUUUGGGCAAAGAUGCUGAAUGGUAGUUACCAUUUACCAUUUACCAGUUACCAU--------------------GUUACCUGAUCUUUGAGAC-AACCGCAACCCA ..........(((...(((..(((((((..((((((((((.......)))))))))).(((.((....--------------------..)).))))))))))...)-))..)))..... ( -21.20) >DroEre_CAF1 76972 98 + 1 CAGAAACAAAUGCAUUUUGGGCAAAGAUGCUGAAUGGUAGUUACCAGUUACCAGUUACCAGUUACCA---------------------GUUACCUGAUCUUCGAGAC-GACCGCAACCCA ..........(((...(((..(.(((((((((..((((((.......)))))).....))))...((---------------------(....)))))))).)...)-))..)))..... ( -15.30) >DroYak_CAF1 62018 99 + 1 CAGAAACAAAUGCAUUUUGGGCAAAGAUGCUGAAUGGUAGUUACCAUUUACCAUUUACCAUCUACCA---------------------GUUACCUGAUCUUUGAGACCAACCGCAACCCA ..........(((...((((.((((((((.((((((((((.......)))))))))).)......((---------------------(....))))))))))...))))..)))..... ( -25.00) >consensus CACAAACAAAUGCAUUUUGGGCAAAGAUGCUGAAUGGUAGUUACCAUUUACCAUUUACCAUUUACCA_____________________GUUACCUGAUCUUUGAGAC_AACCGCAACCCA ..........(((....(((....(((((.((((((((((.......)))))))))).))))).))).....................(((..((........))...))).)))..... (-16.46 = -16.74 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:39 2006