Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,998,009 – 15,998,119 |
Length | 110 |
Max. P | 0.861519 |
Location | 15,998,009 – 15,998,119 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.42 |
Mean single sequence MFE | -29.98 |
Consensus MFE | -25.34 |
Energy contribution | -26.50 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.05 |
Mean z-score | -1.49 |
Structure conservation index | 0.85 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.756940 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15998009 110 + 22224390 AUUCG----------CAAAUCAAUGGCAGAAUGCACUCGCUCCCAUAAACAUGGAGCGUAAAUUGAUUUUAAGAAUUUUCGCGCGUGCAUUUGUUCUGCCCUUCAUGCGUUAAGUGAACA ...((----------((.......((((((((((((..((..((((....)))).(((.(((((.........))))).)))))))))))....)))))).....))))........... ( -28.60) >DroSec_CAF1 66063 120 + 1 AUUCGCAGACAUUAGCAAAUCAAUGGCAGAAUGCACUCGCUCCCAUAAACAUGGAGCGUAAAUUGAUUUUAAGAAUUUUCGCGCGUGCAUUUGUUCUGCCCUUCAUGCGUUAAGUGAACA .(((((.....(((((..((.((.((((((((((((..((..((((....)))).(((.(((((.........))))).)))))))))))....)))))).)).))..)))))))))).. ( -30.60) >DroSim_CAF1 60236 120 + 1 AUUCGCAGACAUUAGCAAAUCAAUGGCAGAAUGCACUCGCUCCCAUAAACAUGGAGCGUAAAUUGAUUUUAAGAAUUUUCGCGCGUGCAUUUGUUCUGCCCUUCAUGCGUUAAGUGAACA .(((((.....(((((..((.((.((((((((((((..((..((((....)))).(((.(((((.........))))).)))))))))))....)))))).)).))..)))))))))).. ( -30.60) >DroEre_CAF1 64896 120 + 1 AUUCGCAGACAUUAGCAAAUCAAUGGCAGCAUGCACUCGCUCCCAUAAACAUGGAGCGUAAAUUGAUUUUAAGAAUUUUCGCGCGUGCAUUUGUUCUGUCCUUCAUGCGUUAAGUGAACA ...((((((((..(((((((........((((((...((((((.........))))))((((.....))))...........))))))))))))).)))).....))))........... ( -26.90) >DroYak_CAF1 49231 120 + 1 AUUCGCAGACAUUGGCAAAUCAAUGCCAGAAUGCACUCGCUCCCAUAAACAUGGAGCGUAAAUUGAUUUUAAGAAUUUUCGCGCGUGCAUUUGUUCUGCCCUUCAUGCGUUAAGUGAACA ....(((((...(((((......)))))((((((((..((..((((....)))).(((.(((((.........))))).)))))))))))))..)))))..(((((.......))))).. ( -33.20) >consensus AUUCGCAGACAUUAGCAAAUCAAUGGCAGAAUGCACUCGCUCCCAUAAACAUGGAGCGUAAAUUGAUUUUAAGAAUUUUCGCGCGUGCAUUUGUUCUGCCCUUCAUGCGUUAAGUGAACA .(((((.....(((((..((.((.((((((((((((..((..((((....)))).(((.(((((.........))))).)))))))))))....)))))).)).))..)))))))))).. (-25.34 = -26.50 + 1.16)
Location | 15,998,009 – 15,998,119 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.42 |
Mean single sequence MFE | -32.28 |
Consensus MFE | -26.67 |
Energy contribution | -27.32 |
Covariance contribution | 0.65 |
Combinations/Pair | 1.00 |
Mean z-score | -1.75 |
Structure conservation index | 0.83 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.861519 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15998009 110 - 22224390 UGUUCACUUAACGCAUGAAGGGCAGAACAAAUGCACGCGCGAAAAUUCUUAAAAUCAAUUUACGCUCCAUGUUUAUGGGAGCGAGUGCAUUCUGCCAUUGAUUUG----------CGAAU ...........((((.....((((((....((((((....((....))..............((((((.........)))))).)))))))))))).......))----------))... ( -32.60) >DroSec_CAF1 66063 120 - 1 UGUUCACUUAACGCAUGAAGGGCAGAACAAAUGCACGCGCGAAAAUUCUUAAAAUCAAUUUACGCUCCAUGUUUAUGGGAGCGAGUGCAUUCUGCCAUUGAUUUGCUAAUGUCUGCGAAU ...........((((.....((((((....((((((....((....))..............((((((.........)))))).))))))))))))...(((........)))))))... ( -32.70) >DroSim_CAF1 60236 120 - 1 UGUUCACUUAACGCAUGAAGGGCAGAACAAAUGCACGCGCGAAAAUUCUUAAAAUCAAUUUACGCUCCAUGUUUAUGGGAGCGAGUGCAUUCUGCCAUUGAUUUGCUAAUGUCUGCGAAU ...........((((.....((((((....((((((....((....))..............((((((.........)))))).))))))))))))...(((........)))))))... ( -32.70) >DroEre_CAF1 64896 120 - 1 UGUUCACUUAACGCAUGAAGGACAGAACAAAUGCACGCGCGAAAAUUCUUAAAAUCAAUUUACGCUCCAUGUUUAUGGGAGCGAGUGCAUGCUGCCAUUGAUUUGCUAAUGUCUGCGAAU ...........((((....((.(((.....((((((....((....))..............((((((.........)))))).)))))).)))))...(((........)))))))... ( -28.80) >DroYak_CAF1 49231 120 - 1 UGUUCACUUAACGCAUGAAGGGCAGAACAAAUGCACGCGCGAAAAUUCUUAAAAUCAAUUUACGCUCCAUGUUUAUGGGAGCGAGUGCAUUCUGGCAUUGAUUUGCCAAUGUCUGCGAAU .((((.(((........))).(((((.(((((((((....((....))..............((((((.........)))))).))))))).(((((......))))).))))))))))) ( -34.60) >consensus UGUUCACUUAACGCAUGAAGGGCAGAACAAAUGCACGCGCGAAAAUUCUUAAAAUCAAUUUACGCUCCAUGUUUAUGGGAGCGAGUGCAUUCUGCCAUUGAUUUGCUAAUGUCUGCGAAU ....................((((((....((((((....((....))..............((((((.........)))))).))))))))))))....((((((........)))))) (-26.67 = -27.32 + 0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:14 2006