Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,984,406 – 15,984,509 |
Length | 103 |
Max. P | 0.890215 |
Location | 15,984,406 – 15,984,509 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.71 |
Mean single sequence MFE | -40.56 |
Consensus MFE | -34.42 |
Energy contribution | -34.46 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.58 |
Structure conservation index | 0.85 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890215 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15984406 103 - 22224390 ACUCUGUCGGACUUUGGAUUCGGAUUGGGUGCUUGUGCGGGGGAAAGGGAGCGCUCUAUGGACGUGGGGCAGGUCCUUUUUGGUUAAGGAUAUUUGA---CCCCCC-------------- ((((.(((.((........)).))).))))((....))((((((((((((.((((((((....))))))).).))))))))(((((((....)))))---))))))-------------- ( -40.00) >DroSec_CAF1 52329 106 - 1 ACUCUGUCGGACUUUGGAUUCGGAUUGGGUGCUUGUGCGGGGGAAAGGGAGCGCUCUAUGGACGUGGGGCAGGUCCUUUUUGGUUAAGGAUAUUUGAACACCCCCC-------------- ((((.(((.((........)).))).))))((....))((((((((((((.((((((((....))))))).).)))))))((.(((((....))))).))))))).-------------- ( -37.10) >DroSim_CAF1 43064 103 - 1 ACUCUGUCGGACUUUGGAUUCGGAUUGGGUGCUUGUGCGGGGGAAAGGGAGCGCUCUAUGGACGUGGGGCAGGUCCUUUUCGGUUAAGGAUAUUUGA---CCCCCC-------------- ((((.(((.((........)).))).))))((....))((((((((((((.((((((((....))))))).).))))))))(((((((....)))))---))))))-------------- ( -42.50) >DroEre_CAF1 51041 117 - 1 ACUCUGUCGGACUUUGGAUUCGGAUUGGGUGCUUGUGCGGGGGAAAGGGAGCGCUCUAUGGACGUGGGGCAGGUCCUUUUUGGUUAAGGAUAUUUGA---CCUCCCCCUCCCACUCCCCA ..............(((....(((.((((.((....))((((((((((((.((((((((....))))))).).))))))..(((((((....)))))---)))))))).)))).)))))) ( -46.40) >DroYak_CAF1 35014 103 - 1 ACUCUGUCGGACUUUGGAUUCGGAUUGGGUGCUUGUGCGGGGGAACGGGAGCGCUCUAUGGACGUGGGGCAGGUCCUUUUUGGUUAAGGAUAUUUGA---CCCCCC-------------- ((((.(((.((........)).))).))))((....))(((((((.((((.((((((((....))))))).).)))).)))(((((((....)))))---))))))-------------- ( -36.80) >consensus ACUCUGUCGGACUUUGGAUUCGGAUUGGGUGCUUGUGCGGGGGAAAGGGAGCGCUCUAUGGACGUGGGGCAGGUCCUUUUUGGUUAAGGAUAUUUGA___CCCCCC______________ ((((.(((.((........)).))).))))((....))((((((((((((.((((((((....))))))).).)))))))...(((((....)))))...)))))............... (-34.42 = -34.46 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:40 2006