Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,975,341 – 15,975,451 |
Length | 110 |
Max. P | 0.516356 |
Location | 15,975,341 – 15,975,451 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.90 |
Mean single sequence MFE | -34.76 |
Consensus MFE | -21.44 |
Energy contribution | -23.08 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.03 |
Mean z-score | -1.95 |
Structure conservation index | 0.62 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516356 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15975341 110 + 22224390 GG-------GGGCGGGCAUUUC---CGAUCCUAUAAAGUACCGCUGCAUGGCAACAUGGCCACAAAAGGGUCCUUUGUACUGUUAAAAGGGCUCAUUGUAUUCGUGUACACGGGGUACAA ((-------(..((((....))---))..))).....(((((....((((....)))).((......(((((((((.........)))))))))..(((((....))))).))))))).. ( -38.70) >DroSec_CAF1 43177 96 + 1 GG--------G--GGGCAUUUC---CGACCCUAUAAAGUACCGUUGCAAGGCAACAUGGCCACAAAAGGGUCCUUUGUGCAGUUAAAAGGGCUCAUUGUACUCGU-----------ACAA ((--------(--.((.....)---)..)))......((((...((((((((......)))......(((((((((.........))))))))).)))))...))-----------)).. ( -28.90) >DroSim_CAF1 34339 97 + 1 GG-------GG--GGGCAUUUC---CGACCCUAUAAAGUACCGUUGCAAGGCAACAUGGCCACAAAAGGGUCCUUUGUGCAGUUAAAAGGGCUCAUUGUACUCGU-----------ACAA ((-------(.--.((.....)---)..)))......((((...((((((((......)))......(((((((((.........))))))))).)))))...))-----------)).. ( -30.60) >DroEre_CAF1 42039 105 + 1 AU--------G--GGGCAUUUC---CGACCCUAUAAAGUACCGUUGCAAGGCAACAUGGCCACAAAAGGGUCCUUUGUGCAGUUAAAAGGGCUCAUUGUAGUCGUG--CAUGGGGUACAA ((--------(--((((.....---.).))))))...((((((((((...)))))(((((.((((..(((((((((.........))))))))).)))).))))).--.....))))).. ( -37.60) >DroYak_CAF1 25895 115 + 1 AGGGGGAAGGG--GGGCAUUUCCUUCGACCCCAUAAAGUACCGUUGCAAGGCAACAUGGCCACAAAAGGGUCCUUUGUGCAGUUAAAAG-UCUCAUUGUACUCGUG--CAUGGGGUACAA ..((((..(((--(((....))))))..)))).....(((((.(((((.(((......)))...((((....))))(((((((......-....)))))))...))--)).).))))).. ( -38.00) >consensus GG_______GG__GGGCAUUUC___CGACCCUAUAAAGUACCGUUGCAAGGCAACAUGGCCACAAAAGGGUCCUUUGUGCAGUUAAAAGGGCUCAUUGUACUCGUG__CA_GGGGUACAA .............((((.........).)))......((((((((((...)))))((((..((((..(((((((((.........))))))))).))))..))))........))))).. (-21.44 = -23.08 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:22 2006