Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,945,065 – 15,945,185 |
Length | 120 |
Max. P | 0.664507 |
Location | 15,945,065 – 15,945,185 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.50 |
Mean single sequence MFE | -32.83 |
Consensus MFE | -31.06 |
Energy contribution | -31.38 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.15 |
Mean z-score | -1.36 |
Structure conservation index | 0.95 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.664507 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15945065 120 - 22224390 UCCUCCGGCUAUCUACACAUACUUUAACUGCCAAAUGGGUAGUGAGCAAAGGUUGUGGCAAAGUUUUGCCCAAAGACGCCUCUCGUUCGACCCUUUGCUUUUCUCAAAGGUCAAGCUUAA ......((((((((............((((((.....))))))((((((((((((.(((((....)))))))).((((.....))))....))))))))).......))))..))))... ( -32.30) >DroSec_CAF1 13567 118 - 1 --CUCCGGCUAUCUACACAUCCUUUAACUGCCAAACGGGUAGUGAGCAUAGGUUGUGGCAAAGUUUUGCCAAAAGACGCCUCUCGCUCGACCCUUUGCUUUUCUCAAAGAUCAAGCUUAA --....((((((((............((((((.....))))))(((((..(((((((((((....))))))......((.....)).)))))...))))).......))))..))))... ( -30.50) >DroSim_CAF1 8122 118 - 1 --CUCCGGCUAUUUACACAUCCUUUAACUGCCAAACGGGUAGUGAGCAUAGGUUGUGGCAAAGUUUUGCCAAAAGACGUCUCUCGCUCGACCCUUUGCUUUUCUCAAAGGUCAAGCUUAA --....(((.((((.((((.(((...((((((.....))))))......))).))))...))))...)))..............(((.((((.((((.......)))))))).))).... ( -32.10) >DroEre_CAF1 12755 120 - 1 UCCUCCGGCUAUCUACACAUCCUUUAGCUGCCAAGUGGGUAGUGCGCGAAGGUUGUGGCAAAGUUGUGCCAAAAGACGCCUCUCGCUCGACCCUUUGCUUUCCUCAGAGGUCAAGCUCAC ......(((..(((..(((.(((((.((((((.....))))))....))))).)))((((......))))...))).)))....(((.((((.((((.......)))))))).))).... ( -36.40) >consensus __CUCCGGCUAUCUACACAUCCUUUAACUGCCAAACGGGUAGUGAGCAAAGGUUGUGGCAAAGUUUUGCCAAAAGACGCCUCUCGCUCGACCCUUUGCUUUUCUCAAAGGUCAAGCUUAA ......(((......((((.(((((.((((((.....))))))....))))).)))).....(((((.....))))))))....(((.((((.((((.......)))))))).))).... (-31.06 = -31.38 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:21 2006