Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,939,826 – 15,939,945 |
Length | 119 |
Max. P | 0.952142 |
Location | 15,939,826 – 15,939,945 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -31.90 |
Consensus MFE | -27.55 |
Energy contribution | -27.22 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.09 |
Mean z-score | -2.58 |
Structure conservation index | 0.86 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.879317 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15939826 119 + 22224390 CUGCAAAAGCGC-GCGUAGUAGCUAUUUUUGGAGACUAAACUACCGCCAUCUGUUGGUGUUUAUUCAAAACAGACGUAAAAAAGUAUGUUACACAAAAUAAAUUUUUUGUGUAGUUACUA .(((....(.((-(.(((((((((........)).))..))))))))).((((((..((......)).)))))).)))....((((...(((((((((......)))))))))..)))). ( -28.50) >DroSec_CAF1 8023 120 + 1 CUGCAAAAGCGCUGCGUAGUAGCCAUUUUUGGAGGCUUAAUUGUCGCCAUCUGUUGGUGUUUAUUCACAACAGACGUGAAAAAGUAUGUUACACAAAAUAAUUUUUUUGUGUAGUUACUA ((.((((((.(((((...)))))..)))))).)).........((((..(((((((.((......))))))))).))))...((((...(((((((((......)))))))))..)))). ( -33.70) >DroSim_CAF1 2092 120 + 1 AUGCAAAAGCGCUGCGUAGUAGCCAUUUUUGGAGACUUAAUUGUCGCCAUCUGUUGGUGUUUAUUCACAACAGACGUGUAAAAGUAUGUUACACAAAAUAAAUUUUUUGUGUAGUUACUA .((((...(.(((((...)))))).....(((.(((......))).)))(((((((.((......)))))))))..))))..((((...(((((((((......)))))))))..)))). ( -33.50) >consensus CUGCAAAAGCGCUGCGUAGUAGCCAUUUUUGGAGACUUAAUUGUCGCCAUCUGUUGGUGUUUAUUCACAACAGACGUGAAAAAGUAUGUUACACAAAAUAAAUUUUUUGUGUAGUUACUA .(((....(((......(((..(((....)))..))).......)))..(((((((.((......))))))))).)))....((((...(((((((((......)))))))))..)))). (-27.55 = -27.22 + -0.33)
Location | 15,939,826 – 15,939,945 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -29.70 |
Consensus MFE | -25.65 |
Energy contribution | -26.10 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.03 |
Mean z-score | -3.32 |
Structure conservation index | 0.86 |
SVM decision value | 1.42 |
SVM RNA-class probability | 0.952142 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15939826 119 - 22224390 UAGUAACUACACAAAAAAUUUAUUUUGUGUAACAUACUUUUUUACGUCUGUUUUGAAUAAACACCAACAGAUGGCGGUAGUUUAGUCUCCAAAAAUAGCUACUACGC-GCGCUUUUGCAG .((((..(((((((((......)))))))))...))))......((((((((.((......))..))))))))((((((((..(((...........)))))))).)-))((....)).. ( -28.60) >DroSec_CAF1 8023 120 - 1 UAGUAACUACACAAAAAAAUUAUUUUGUGUAACAUACUUUUUCACGUCUGUUGUGAAUAAACACCAACAGAUGGCGACAAUUAAGCCUCCAAAAAUGGCUACUACGCAGCGCUUUUGCAG .((((..(((((((((......)))))))))...))))......(((((((((((......)).)))))))))(((.......((((.........))))....)))...((....)).. ( -30.70) >DroSim_CAF1 2092 120 - 1 UAGUAACUACACAAAAAAUUUAUUUUGUGUAACAUACUUUUACACGUCUGUUGUGAAUAAACACCAACAGAUGGCGACAAUUAAGUCUCCAAAAAUGGCUACUACGCAGCGCUUUUGCAU (((((..(((((((((......))))))))).(((..........((((((((((......)).))))))))((.(((......))).))....)))..))))).((((.....)))).. ( -29.80) >consensus UAGUAACUACACAAAAAAUUUAUUUUGUGUAACAUACUUUUUCACGUCUGUUGUGAAUAAACACCAACAGAUGGCGACAAUUAAGUCUCCAAAAAUGGCUACUACGCAGCGCUUUUGCAG .((((..(((((((((......)))))))))...))))......(((((((((((......)).)))))))))(((.......((((.........))))....)))...((....)).. (-25.65 = -26.10 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:17 2006