Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,936,555 – 15,936,675 |
Length | 120 |
Max. P | 0.570395 |
Location | 15,936,555 – 15,936,675 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.52 |
Mean single sequence MFE | -33.47 |
Consensus MFE | -25.49 |
Energy contribution | -25.60 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.08 |
Structure conservation index | 0.76 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.570395 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15936555 120 + 22224390 CAUUUUUUUUUUUCGCUGAGCAAGGGCCUCGUCAUCGUCUUGCCAAACUCGCAUGUUGGCAAGAUACACACAUAUAUGGAUGUACGAAUGUACAUACAUACGUACGAAAGGUUGUAGCUG ..................(((.(.(((((..((...((((((((((.(......)))))))))))................(((((.((((....)))).))))))).))))).).))). ( -33.60) >DroSec_CAF1 4859 113 + 1 UA---UUUUUUUUCGCUGAGCAAGGGCCUCGUCAUCGUCUUGCCAAACUCGCAUGUUGGCAAGAUACACACAUAUAUGGAUGUACGAAUGUACA----UACGUACGAAAGGUUGUAGCUG ..---.............(((.(.((((((((((((((((((((((.(......))))))))))).....((....)))))).)))).(((((.----...)))))...)))).).))). ( -33.50) >DroEre_CAF1 4606 111 + 1 UA---U-UUUUUUCGCUGAGCAAGGGCCUCGCCAUCGUCUUGCCAAACUCGCAUGUUGGCAAGAUACACACAUGUAUGUAU-U----AUAUACAUGCAUACGUACAAAAGGUUGUGGCUG ..---.-.................((((.((((...((((((((((.(......)))))))))))......((((((((((-.----..))))))))))..........)).)).)))). ( -33.30) >consensus UA___UUUUUUUUCGCUGAGCAAGGGCCUCGUCAUCGUCUUGCCAAACUCGCAUGUUGGCAAGAUACACACAUAUAUGGAUGUACGAAUGUACAU_CAUACGUACGAAAGGUUGUAGCUG ..................(((.(.(((((.......((((((((((.(......))))))))))).......................(((((........)))))..))))).).))). (-25.49 = -25.60 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:11 2006