Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,932,469 – 15,932,570 |
Length | 101 |
Max. P | 0.917486 |
Location | 15,932,469 – 15,932,570 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 90.76 |
Mean single sequence MFE | -25.17 |
Consensus MFE | -23.25 |
Energy contribution | -23.70 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.13 |
Mean z-score | -2.18 |
Structure conservation index | 0.92 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.917486 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15932469 101 - 22224390 GUGAAAGCAAUUUGCCGAACAGAAACGGUGAUACAAGUUUACAAAGGAGAAAUGGUGACAUCAAUUUGCAAAUGCGAAAUGGUGACACCAGUUUGCAGAUA ((....)).((((((.((((.......((((.......))))..........(((((.(((((.(((((....))))).))))).))))))))))))))). ( -29.20) >DroSim_CAF1 16237 101 - 1 GUGAAAGCAAUUUGCAGAACAGAAACGGUGACACAAGUUUACAAAGGAGAAAUGGUGACACCAAUUUGCAAUUGCGAAAUGGUGAUAACAGUUUGCAGAUA ((....)).(((((((((.............(((...(((........)))...))).(((((.(((((....))))).))))).......))))))))). ( -25.60) >DroYak_CAF1 15281 101 - 1 GUGACAGCAGCUUGCAGAACAGAAACGGUGACACAAGUUUACAAAGGAGAAAUGGUGACACGAAUGUGCCAAUGCGAAAUGGUGCCGCCAGUUUGCAGAUA ...........(((((((........(....)....................(((((.(((.(...(((....)))...).))).))))).)))))))... ( -20.70) >consensus GUGAAAGCAAUUUGCAGAACAGAAACGGUGACACAAGUUUACAAAGGAGAAAUGGUGACACCAAUUUGCAAAUGCGAAAUGGUGACACCAGUUUGCAGAUA ((....)).((((((.((((.......((((.......))))..........(((((.(((((.(((((....))))).))))).))))))))))))))). (-23.25 = -23.70 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:08 2006