Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,732,514 – 1,732,627 |
Length | 113 |
Max. P | 0.617852 |
Location | 1,732,514 – 1,732,627 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.06 |
Mean single sequence MFE | -22.82 |
Consensus MFE | -22.04 |
Energy contribution | -21.88 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -1.06 |
Structure conservation index | 0.97 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.617852 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1732514 113 - 22224390 GCUCAUAUCGCUUUUAUU-------UGUUAAAUUGCGUGUCUAAGUGUAUAUAUCAAUAAUUCUUGUAUGUUAUGUAUAUGAACUGUUAUGUACAUAUGCAAGGCAUGUAACACGUUUCG ((..(((((((((..((.-------(((......))).))..))))).))))..........((((((...(((((((((((....)))))))))))))))))))............... ( -22.90) >DroSec_CAF1 3733 113 - 1 GCUCAUAUCGCUUUUAUU-------UGUUAAAUUGCGUGUCUAAGUAUAUAUAUCAAUAAUUCUUGUAUGUUAUGUAUAUGAACUGUUAUGUACAUAUGCAAGGCAUGUAACACGUUUCG ((.......)).......-------.......((((((((((....(((((((...........)))))))..((((((((.((......)).))))))))))))))))))......... ( -22.70) >DroSim_CAF1 4287 113 - 1 GCUCAUAUCGCUUUUAUU-------UGUUAAAUUGCGUGUCUAAGUAUAUAUAUCAAUAAUUCUUGUAUGUUAUGUAUAUGAACUGUUAUGUACAUAUGCAAGGCAUGUAACACGUUUCG ((.......)).......-------.......((((((((((....(((((((...........)))))))..((((((((.((......)).))))))))))))))))))......... ( -22.70) >DroEre_CAF1 3879 120 - 1 GCUCAUAUCGCUUUUAUUUGUUAUUUGUUAAAUUGCGUGUCUAAGUGUAUAUAUUAAUAAUUCUUGUAUGUUAUGUAUAUGAACUGUUAUGUACAUAUGCAAGGCAUGUAACAUGUUUUG ....(((((((((..((.(((.(((.....))).))).))..))))).))))..........((((((...(((((((((((....)))))))))))))))))(((((...))))).... ( -22.90) >DroYak_CAF1 3967 120 - 1 GCUCAUAUCGCUUUUAUUUGUUAUUUGUUAAAUUGCGUGUCUAAGUGUAUAUAUCAAUAAUUUUUGUAUGUUAUGUAUAUGAACUGUUAUGUACAUAUGCAAGGCAUGUAACAUGGUUCG ((.......)).....................((((((((((......(((((.(((......))))))))..((((((((.((......)).))))))))))))))))))......... ( -22.90) >consensus GCUCAUAUCGCUUUUAUU_______UGUUAAAUUGCGUGUCUAAGUGUAUAUAUCAAUAAUUCUUGUAUGUUAUGUAUAUGAACUGUUAUGUACAUAUGCAAGGCAUGUAACACGUUUCG ((.......)).....................((((((((((......(((((.(((......))))))))..((((((((.((......)).))))))))))))))))))......... (-22.04 = -21.88 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:43 2006