Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,843,179 – 15,843,299 |
Length | 120 |
Max. P | 0.523487 |
Location | 15,843,179 – 15,843,299 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.25 |
Mean single sequence MFE | -28.93 |
Consensus MFE | -21.04 |
Energy contribution | -20.88 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.15 |
Mean z-score | -1.69 |
Structure conservation index | 0.73 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523487 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15843179 120 - 22224390 AGCAAAACAUCCAUCGUGCGAAGCCAAUGGCUUUAAUAAAUAUAAGAAGAAGCCAAAGUUCAGAUUUAAAUCUGGAUCCUUUACGCGAAGUAUUCGUUUUGGAUUAUAGAUGUGUCCUGU .(((..(((((..(((((..(((....(((((((..............)))))))..((((((((....)))))))).)))..))))).(((.((......)).))).)))))....))) ( -29.04) >DroSec_CAF1 5479 120 - 1 AGCAUAACAUGCAUCGUGCGAAGCCAAUGGCUUUAAUAAAUAUAAAAAGAAGGCAAAGUUCAGAUUGGAAUCUGGAUCCUUUACGCGAAGUAUUCGUGUUGGAUUAUAGAUAUGUCCUGU (((((...((((.(((((.((((((...))))))..............(((((....((((((((....))))))))))))).))))).))))..)))))((((.........))))... ( -30.70) >DroSim_CAF1 3207 120 - 1 AGCGAAACAUGCUUCGUGCGAAGCCAAUGGCUUUAAUAAAUAUAAGAAGAAGGCAAAGUUCAGAUUGGAAUCUGGAUCCUUUACGCGAAGUAUUCGUUUUGGAUUAUAGAUAUGUCCUGU (((((...((((((((((.((((((...))))))..............(((((....((((((((....))))))))))))).)))))))))))))))..((((.........))))... ( -35.00) >DroEre_CAF1 5906 120 - 1 AGCAAAACAUGUAUCAUGCGAAGCCAAUGGUUUGAAUAAAUAUAAGAAAAAGGCAAAGUUCAGAUUAGAAUCUGGAUCCUUAACGCAAAGUAUUCUUUUCGGAUUAUAUAUGUGUCCUGU .(((..((((((((.((.(((((..((((.((((...............((((....((((((((....))))))))))))....)))).))))..))))).)).))))))))....))) ( -25.81) >DroYak_CAF1 2851 120 - 1 AGCAAAACAUGUAUCAUGCGAAGCCAAUGGCUUGAAUAAAUAGAAGAAAGAGGCAAAGUUCAAAUUGGAAUCUGGAUCCUUAACGCAUAGUAUUCUUUUUGGAUUAUAUAUGUGUCCUGU .(((..((((((((.((((((((((...)))))................((((...(((((......))).))....))))..))))).(((.(((....))).)))))))))))..))) ( -24.10) >consensus AGCAAAACAUGCAUCGUGCGAAGCCAAUGGCUUUAAUAAAUAUAAGAAGAAGGCAAAGUUCAGAUUGGAAUCUGGAUCCUUUACGCGAAGUAUUCGUUUUGGAUUAUAGAUGUGUCCUGU .(((..((((......(((((((((...)))))...............(((((....((((((((....))))))))))))).))))..(((.((......)).)))....))))..))) (-21.04 = -20.88 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:59 2006