Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,831,320 – 15,831,440 |
Length | 120 |
Max. P | 0.973541 |
Location | 15,831,320 – 15,831,440 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.00 |
Mean single sequence MFE | -46.32 |
Consensus MFE | -41.28 |
Energy contribution | -42.64 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.02 |
Mean z-score | -1.74 |
Structure conservation index | 0.89 |
SVM decision value | 1.71 |
SVM RNA-class probability | 0.973541 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15831320 120 - 22224390 AGCCAGUUCCUACCCACAUUGGGAGCACCGUCGUGGAGCACAACAUCGGCCUUCCACGAUUGCAGCUCCUUGGUCAGCGAUUGGCGGCACUUCUCGGUGGUGAUGUCCUCGACGAGACCA .(((((((.((..(((....((((((.(.((((((((((.(......)))..)))))))).)..)))))))))..)).)))))))((..(((.((((.((......)))))).))).)). ( -45.80) >DroSec_CAF1 3443 120 - 1 AGCCAGUUCCUACCCACAUUGGGUGCACCGUCGUGGAGCACAACGUCGGCCUUCCACGAUUGCAGCUCCUUGGUCAGCGAUUGGCGGCACUUCUCGGUGGUGAUGUCCUCGACGAGGCCA .(((((((.((..(((....((.((((..((((((((((.(......)))..)))))))))))).))...)))..)).)))))))(((.(((.((((.((......)))))).)))))). ( -48.10) >DroSim_CAF1 3436 120 - 1 AGCCAGUUCCUACCCACAUUGGGUGCACCGUCGUGGAGCACAACAUCGGCCUUCCACGAUUGCAGCUCCUUGGUCAGCGAUUGGCGGCACUUCUCGGUGGUGAUGUCCUCGACGAGGCCA .(((((((.((..(((....((.((((..((((((((((.(......)))..)))))))))))).))...)))..)).)))))))(((.(((.((((.((......)))))).)))))). ( -48.10) >DroEre_CAF1 4182 120 - 1 AGCCAGUUCCUGCCCACAUUGGGAGCACCAUCGUGGAGCACAACAUCGGCCUUCCACGAUUGCAGCUCCUUUGUCAGCGAUUGGCGGCACUUCUCGGUGGUGAUAUCCUCAACGAGGCCA .(((((((.(((...(((..((((((.(.((((((((((.(......)))..)))))))).)..)))))).)))))).)))))))(((....((((..((......))....))))))). ( -46.90) >DroYak_CAF1 3385 120 - 1 AACCAGUUCCUGCCCACAUUGGGAGCACCAUCGUGGAGCACAACAUCGGCCUUCCACGAUUGCAGCUCCUUGGUCAGCGAUUGGCGGCACUUCUCCGUGGUGAUGUCCUCAACGAGGCCA ..((((((.(((.(((....((((((.(.((((((((((.(......)))..)))))))).)..))))))))).))).)))))).(((.(((....(.((......)).)...)))))). ( -42.70) >consensus AGCCAGUUCCUACCCACAUUGGGAGCACCGUCGUGGAGCACAACAUCGGCCUUCCACGAUUGCAGCUCCUUGGUCAGCGAUUGGCGGCACUUCUCGGUGGUGAUGUCCUCGACGAGGCCA .(((((((.((..(((....((((((.(.((((((((((.(......)))..)))))))).)..)))))))))..)).)))))))(((.(((.((((.((......)))))).)))))). (-41.28 = -42.64 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:51 2006