Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,827,429 – 15,827,548 |
Length | 119 |
Max. P | 0.542484 |
Location | 15,827,429 – 15,827,548 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.44 |
Mean single sequence MFE | -48.08 |
Consensus MFE | -44.79 |
Energy contribution | -45.23 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.08 |
Mean z-score | -1.37 |
Structure conservation index | 0.93 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542484 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15827429 119 + 22224390 UUUGUGU-UGCGGCACCAUGGAGGACCCCAAUCGCAUGUUGGCCCACACCGGCGGCAUGAUGGCUCCGCAAGGAUACGGCUUGUCUGGCCAGGAUGAUGGCCAGAAUGCCGGCAGCGAGA ....(((-(((....((((((......)).....(((((((.((......))))))))))))).(((....)))..((((...((((((((......))))))))..))))))))))... ( -50.70) >DroSec_CAF1 6323 120 + 1 UUUGAGUUUGCUGCAUCAUGGAGGAUCCCAAUCGCAUGUUGGCCCACACCGGCGGCAUGAUGGCUCCGCAAGGAUACGGCUUGUCUGGCCAGGACGAUGGCCAAAAUGCCGGCAGCGAGA ......(((((((((((...(.(((..(((....(((((((.((......))))))))).))).))).)...))).((((...(.((((((......)))))).)..)))))))))))). ( -47.70) >DroSim_CAF1 6119 120 + 1 UUUGAGUUUGCGGCAUCAUGGAGGAUCCCAAUCGCAUGUUGGCCCACACCGGCGGCAUGAUGGCUCCGCAAGGAUACGGCUUGUCUGGCCAGGACGAUGGCCAGAAUGCCGGCAGCGAGA ......(((((..((((((((......))....((.((((((......))))))))))))))(((((....)))..((((...((((((((......))))))))..)))))).))))). ( -51.60) >DroYak_CAF1 6115 119 + 1 UUUCA-UUUGUGGCGUCAUGGAGGAUCCCAAUCGCAUGUUGGCCCACACCGGUGGCAUGAUGGCUCCGCAAGGAUACGGCUUGUCUGGCCAGGAUGAUGGACAGAAUGCCGGCAGCGAGA .....-(((((..(((((((.......(((((.....))))).((((....)))))))))))(((((....)))..((((...((((.(((......))).))))..)))))).))))). ( -42.30) >consensus UUUGAGUUUGCGGCAUCAUGGAGGAUCCCAAUCGCAUGUUGGCCCACACCGGCGGCAUGAUGGCUCCGCAAGGAUACGGCUUGUCUGGCCAGGACGAUGGCCAGAAUGCCGGCAGCGAGA ......(((((..((((((((......))....((.((((((......))))))))))))))(((((....)))..((((...((((((((......))))))))..)))))).))))). (-44.79 = -45.23 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:46 2006