Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,820,887 – 15,821,047 |
Length | 160 |
Max. P | 0.845652 |
Location | 15,820,887 – 15,820,977 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 88.93 |
Mean single sequence MFE | -20.07 |
Consensus MFE | -15.91 |
Energy contribution | -16.13 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.07 |
Mean z-score | -2.53 |
Structure conservation index | 0.79 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.809943 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15820887 90 + 22224390 UCAACUUGCUUGAAGGUCAUAGCUUAAGCUGACCAAAAGGCAAGUAAAAAAGUAGUUAUUAAUGUUUUUGUUUGCUUUAUUUUGUAAUAU-- ...((((((((...(((((..((....)))))))...))))))))...(((((((....(((.....))).)))))))............-- ( -21.10) >DroSec_CAF1 3923 89 + 1 UCAUGUUACUUGAAGGUCAUAGCUAAAGCUGACCAAAAUGCAAGUAAAAAAGUAGUA---AAUAUUUUUUUUUGCUUUAUUUUGUAUUAUGU .((((.(((.....(((((..((....)))))))((((((.(((((((((((.....---......)))))))))))))))))))).)))). ( -20.30) >DroSim_CAF1 4032 87 + 1 UCAACUUACUUGAAGGUCAUAGCUAAAGCUGACCAAAAGGCAAGUAAAAAAGUAGUA---AAUAUUUUUUGUUGCUUUAUUUUGUAUUAU-- ......(((..((.(((((..((....)))))))..(((((((...((((((((...---..)))))))).))))))).))..)))....-- ( -18.80) >consensus UCAACUUACUUGAAGGUCAUAGCUAAAGCUGACCAAAAGGCAAGUAAAAAAGUAGUA___AAUAUUUUUUUUUGCUUUAUUUUGUAUUAU__ ......(((..((.(((((..((....)))))))..((((((((...(((((((........))))))).)))))))).))..)))...... (-15.91 = -16.13 + 0.23)
Location | 15,820,887 – 15,820,977 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 88.93 |
Mean single sequence MFE | -14.10 |
Consensus MFE | -11.59 |
Energy contribution | -12.03 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.08 |
Mean z-score | -1.96 |
Structure conservation index | 0.82 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.617876 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15820887 90 - 22224390 --AUAUUACAAAAUAAAGCAAACAAAAACAUUAAUAACUACUUUUUUACUUGCCUUUUGGUCAGCUUAAGCUAUGACCUUCAAGCAAGUUGA --.............................................((((((.....(((((((....))..))))).....))))))... ( -14.90) >DroSec_CAF1 3923 89 - 1 ACAUAAUACAAAAUAAAGCAAAAAAAAAUAUU---UACUACUUUUUUACUUGCAUUUUGGUCAGCUUUAGCUAUGACCUUCAAGUAACAUGA .(((..(((........((((..(((((....---.......)))))..)))).....(((((((....))..))))).....)))..))). ( -14.00) >DroSim_CAF1 4032 87 - 1 --AUAAUACAAAAUAAAGCAACAAAAAAUAUU---UACUACUUUUUUACUUGCCUUUUGGUCAGCUUUAGCUAUGACCUUCAAGUAAGUUGA --................((((.(((....))---).........(((((((......(((((((....))..)))))..))))))))))). ( -13.40) >consensus __AUAAUACAAAAUAAAGCAAAAAAAAAUAUU___UACUACUUUUUUACUUGCCUUUUGGUCAGCUUUAGCUAUGACCUUCAAGUAAGUUGA ...............................................((((((.....(((((((....))..))))).....))))))... (-11.59 = -12.03 + 0.45)
Location | 15,820,942 – 15,821,047 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.10 |
Mean single sequence MFE | -24.00 |
Consensus MFE | -18.57 |
Energy contribution | -18.12 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.04 |
Mean z-score | -1.87 |
Structure conservation index | 0.77 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.845652 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15820942 105 + 22224390 -UUAUUAAUGUUUUUGUUUGCUUUAUUUUGUAAUAU----GUUGGUGUAAU----------UCUAUUGUUACAGCGGCUUGGGAAAUGUUAUGCAAACAAUUGAAUGGUAGUAAAGCGAC -((((((..((((((((((((..((((((.(((...----((((.((((((----------......)))))).))))))).))))))....))))))))..))))..))))))...... ( -26.50) >DroSim_CAF1 4087 102 + 1 -UA---AAUAUUUUUUGUUGCUUUAUUUUGUAUUAU----GUUGGUGUAAU----------UGUAUUGUUACAGCGGCUUGGGAAAUGUUAUGCAAACAAUUGAAUGGUAGUAAAGCGAC -..---..........(((((((((((...((((..----((((.((((((----------......)))))).))))........((((.....))))....))))..))))))))))) ( -22.10) >DroYak_CAF1 2799 117 + 1 CUUAU---UCAUUUUUUUUGCUUUAUUUUGUAAUAUAUGUGUUGGUGUAAUUUAGUUGUUUUCUAUUGUUACAGCGGCGUGGGAAAUGUAAUGCUUACAAUUGAAUGGUAGUAAAGCGAU .....---.........(((((((((((..(.........((((.((((((.(((.......)))..)))))).))))(((((..........)))))......)..).)))))))))). ( -23.40) >consensus _UUAU_AAUAUUUUUUUUUGCUUUAUUUUGUAAUAU____GUUGGUGUAAU__________UCUAUUGUUACAGCGGCUUGGGAAAUGUUAUGCAAACAAUUGAAUGGUAGUAAAGCGAC .................(((((((((((..(.........((((.((((((................)))))).))))........((((.....)))).....)..).)))))))))). (-18.57 = -18.12 + -0.44)
Location | 15,820,942 – 15,821,047 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.10 |
Mean single sequence MFE | -10.07 |
Consensus MFE | -7.78 |
Energy contribution | -7.34 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.06 |
Mean z-score | -1.41 |
Structure conservation index | 0.77 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.536074 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15820942 105 - 22224390 GUCGCUUUACUACCAUUCAAUUGUUUGCAUAACAUUUCCCAAGCCGCUGUAACAAUAGA----------AUUACACCAAC----AUAUUACAAAAUAAAGCAAACAAAAACAUUAAUAA- ....................((((((((.................(.(((((.......----------.))))).)...----.((((....))))..))))))))............- ( -11.10) >DroSim_CAF1 4087 102 - 1 GUCGCUUUACUACCAUUCAAUUGUUUGCAUAACAUUUCCCAAGCCGCUGUAACAAUACA----------AUUACACCAAC----AUAAUACAAAAUAAAGCAACAAAAAAUAUU---UA- ((.((((((.............(((((............))))).(.(((((.......----------.))))).)...----...........)))))).))..........---..- ( -9.90) >DroYak_CAF1 2799 117 - 1 AUCGCUUUACUACCAUUCAAUUGUAAGCAUUACAUUUCCCACGCCGCUGUAACAAUAGAAAACAACUAAAUUACACCAACACAUAUAUUACAAAAUAAAGCAAAAAAAAUGA---AUAAG ...((((((............((((.....))))...........(.(((((...(((.......)))..))))).)..................))))))...........---..... ( -9.20) >consensus GUCGCUUUACUACCAUUCAAUUGUUUGCAUAACAUUUCCCAAGCCGCUGUAACAAUAGA__________AUUACACCAAC____AUAUUACAAAAUAAAGCAAAAAAAAACAUU_AUAA_ ...((((((............((((.....))))...........(.(((((..................))))).)..................))))))................... ( -7.78 = -7.34 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:36 2006