Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,820,459 – 15,820,579 |
Length | 120 |
Max. P | 0.582260 |
Location | 15,820,459 – 15,820,579 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.83 |
Mean single sequence MFE | -41.46 |
Consensus MFE | -32.88 |
Energy contribution | -32.64 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.09 |
Mean z-score | -1.53 |
Structure conservation index | 0.79 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.582260 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15820459 120 - 22224390 CCCGGGCUCUCCAAAAGGCGACUCAGACACCGAAUGCGUCGAUUUCGGCGCUGCCCGCUCUGAAUUUGGCCCUGGUGCGCCAACAACAAACGCUUCCAGUUGCCGAAGUGGCCCAAAAUC ...((((((.((....)).)).(((((...((...((((((....))))))....)).))))).((((((.((((.(((...........)))..))))..))))))...))))...... ( -40.30) >DroSec_CAF1 3498 120 - 1 CCCGGGCUCUCCAAAAGACGACCCAGAAACCGAAUGCGUCGAUUUCGGCGCUGCCCGCACUGAAUAUGGUCCUGGUGCGCCAACAACAAACGCUUCCAGUUGCCGAAGUGGCCCAAAAUC ...((((...........((((.((.........)).)))).....(((((.(((.(.(((......))).).)))))))).........((((((........))))))))))...... ( -35.50) >DroSim_CAF1 3603 120 - 1 CCCGGGCUCUCCAAAAGGCGACCCAGACACCGAAUGCGUCGAUUUCGGCGCUGCCCGCACUGAAUAUGGUCCUGGUGCGCCAACAACAAACGCUUCCAGUUGCCGAAGUGGCCCAAAAUC ...((((.........((((..((((..((((...((((((....))))))((....)).......)))).))))..)))).........((((((........))))))))))...... ( -42.40) >DroEre_CAF1 2297 120 - 1 CCCGGGCUCUUCAAAAGGCGACCCAGACACCGAAUGCGUCGAUUUCGGCGGUGCCCGCACUGAAUAUGGUCCUGGUGCGCCAACAACAAACGCUCCCGGUCGCCGAAGUGGCCCAAAAUU ...(((((((((....(((((((..((...((.....((((....))))((((((((.(((......))).).)).))))).........)).))..))))))))))).)))))...... ( -45.00) >DroYak_CAF1 2291 120 - 1 CCCGGGCUCUUCAAAAGGCGACCCAGACGUCGAAUGCGUCGAUUUCGGCGGUGCCCGCACUGAAUAUGGUCCUAAUGCGCCAACAACAAACGCUCCCGGUCGCCGAAGUGGCCCAAAAUC ...(((((((((....(((((((..((.(((((.....))))).))(((((((....)))......((((.(....).))))........))))...))))))))))).)))))...... ( -44.10) >consensus CCCGGGCUCUCCAAAAGGCGACCCAGACACCGAAUGCGUCGAUUUCGGCGCUGCCCGCACUGAAUAUGGUCCUGGUGCGCCAACAACAAACGCUUCCAGUUGCCGAAGUGGCCCAAAAUC ...(((((..........((((.((.........)).))))((((((((((((...((..((....((((.(....).))))....))...))...))).))))))))))))))...... (-32.88 = -32.64 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:33 2006