Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,729,725 – 1,729,831 |
Length | 106 |
Max. P | 0.836049 |
Location | 1,729,725 – 1,729,831 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 84.25 |
Mean single sequence MFE | -28.98 |
Consensus MFE | -17.20 |
Energy contribution | -17.96 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.21 |
Mean z-score | -2.63 |
Structure conservation index | 0.59 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.836049 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1729725 106 + 22224390 UUCCGCUGAAUAAGUGCGGUAUUUAAAUACUGCGA-UUUGGUAUUUGACAUACUAGGUUAGCGGGUAUAUAAAUACCGCGCAAGACCAUUUAGAAUUCAACUAUCGA .....((((((..((((((((((((.(((((((((-((((((((.....)))))))))).)).))))).))))))))))))......)))))).............. ( -33.00) >DroSec_CAF1 976 106 + 1 UUCCGCUGAAUAAGUGCAGUAUUUAAAUACUGCGC-UUUGGUAUUUGGCAGACUACGUUAACGGGUAUAUAAAUACCACGCAAGACCAUUUAGAAUUCAACUAUCGA .....(((((((((((((((((....)))))))))-))(((((((((....(((.((....)))))...)))))))))(....)...)))))).............. ( -29.80) >DroSim_CAF1 1176 106 + 1 UUCCGCUGAAUAAGUGCGGUAUUUAAAUACUGCGC-UUUGGUAUUUGGCAGACUAGGUUAACGGGUAUAUAAAUACCACGCAAGACCAUUUAAAAUUCAACUAUCGA .((.((..((((((((((((((....)))))))))-)....))))..)).))...((((..(((((((....))))).))...)))).................... ( -30.40) >DroEre_CAF1 1088 107 + 1 UUCCGCUGAAUAAGUGCAGUAUUUAAAUACCGGGAUUUUGGUAUGCGGGUGAUUAGGUUAACUGGUAUAUAAAUACCACGCAAAUACAUUUAGACUUCACUUAAUGA ..........((((((.(((......(((((((....)))))))((((((((((((.....))))).......)))).)))............))).)))))).... ( -22.81) >DroYak_CAF1 1178 107 + 1 UUCCGCUCAAUGGGUGCAGUAUUUAAAUACUGCGCAGUUGGUAUUCGGGUGAUCCGGUUAAUUGGUAUAUAAAUACCACGCAUCACUAUUUAGACUUUAAUUAAUGA ..(((.(((((..(((((((((....))))))))).)))))....)))(((((.((......((((((....)))))))).)))))..................... ( -28.90) >consensus UUCCGCUGAAUAAGUGCAGUAUUUAAAUACUGCGC_UUUGGUAUUUGGCAGACUAGGUUAACGGGUAUAUAAAUACCACGCAAGACCAUUUAGAAUUCAACUAUCGA ....((.......(((((((((....)))))))))...(((((((((....(((.(.....).)))...))))))))).)).......................... (-17.20 = -17.96 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:38 2006