Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,815,030 – 15,815,129 |
Length | 99 |
Max. P | 0.811675 |
Location | 15,815,030 – 15,815,129 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.62 |
Mean single sequence MFE | -30.00 |
Consensus MFE | -23.60 |
Energy contribution | -24.63 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.25 |
Mean z-score | -1.32 |
Structure conservation index | 0.79 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.811675 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15815030 99 - 22224390 --------------------UA-GACAGUUCGAAAGCGAUGGAUAUACCUCGCCGUCCGGUGUCAAGGGUAUUCUACGCGAUUCGAGCAUAACCGAUAUAAGUCGUAGGCUAGAUCGACU --------------------..-....(((((((.(((.((((.((((((((((....))))....)))))))))))))..))))))).....((((...(((.....)))..))))... ( -33.00) >DroPse_CAF1 110054 120 - 1 UCUCAAGCUUCGUCAAAACUUGGAACAAGUAAAAAUAGGUGGAAGUACUCCACUACUUUGUGUAAAGGGUAUUCUCCGUGAAUCAAGUGUGUUCGAUAUAAACCGUUGCAUGGACCGUGA ..(((.(.((((((((.(((((...))))).......((((((((((((((((......)))....))))))).))).(((((.......)))))......))).))).))))).).))) ( -22.00) >DroSec_CAF1 15337 99 - 1 --------------------UA-GACAGUUCGAAAGCGAUGGAUAUACCUCGCCGUCCGGUGUCAAGGGUAUUCUACGCGAUUCGAGCAUAACCGAUAUAAGUCGUAGACUGGAUCGACU --------------------..-....(((((((.(((.((((.((((((((((....))))....)))))))))))))..))))))).....((((...((((...))))..))))... ( -34.40) >DroSim_CAF1 18004 99 - 1 --------------------UA-GACAGUUCGAAAGCGAUGGAUAUACCUCGCCGUCCGGUGUCAAGGGUAUUCUACGCGAUUCGAGCAUAACCGAUAUAAGUCGUAGACUGGAUCGACU --------------------..-....(((((((.(((.((((.((((((((((....))))....)))))))))))))..))))))).....((((...((((...))))..))))... ( -34.40) >DroEre_CAF1 14391 99 - 1 --------------------UA-GACAAUUCGAAAGCGAUGGAUAUACCUCGCCGUCCGGUGUCAAGGGUAUUCUGCGCGAUUCGAGCAUAACCGAUAUAAGUCGAAGACUGGAUCGACU --------------------..-.....((((((.(((.((((.((((((((((....))))....)))))))))))))..))))))......((((...((((...))))..))))... ( -29.30) >DroYak_CAF1 15383 99 - 1 --------------------UA-GACAAUUCGAAAGCGAUGGAUAUACCUCGCCGUCCGGUGUGAAGGGUAUUUUGCGCGAUUCGAGCAUAACCGAUAUAAGUCGACGACUGGAUCGACU --------------------..-.....((((((.(((......((((((((((....))))....))))))....)))..))))))......((((...((((...))))..))))... ( -26.90) >consensus ____________________UA_GACAAUUCGAAAGCGAUGGAUAUACCUCGCCGUCCGGUGUCAAGGGUAUUCUACGCGAUUCGAGCAUAACCGAUAUAAGUCGUAGACUGGAUCGACU ...........................(((((((.(((.((((.((((((((((....))))....)))))))))))))..))))))).....((((...((((...))))..))))... (-23.60 = -24.63 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:26 2006