Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,812,962 – 15,813,082 |
Length | 120 |
Max. P | 0.586414 |
Location | 15,812,962 – 15,813,082 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.00 |
Mean single sequence MFE | -40.80 |
Consensus MFE | -26.35 |
Energy contribution | -25.22 |
Covariance contribution | -1.13 |
Combinations/Pair | 1.33 |
Mean z-score | -1.43 |
Structure conservation index | 0.65 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.586414 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15812962 120 + 22224390 CAGGGAACGAGUGCGAUGGAGAUUCACCUCCAUCUCGGUCAGUUCCUUCUCCUCCUGGAUUAGCUGAUCAAUGGAAUGUUUCGGCGAUAGGGCGGUUAUCUUCCGCUGCUGGCCGAUCUC .(((((((((.((.(((((((......))))))).)).)).)))))))....(((..((((....))))...))).....(((((..((((((((.......))))).)))))))).... ( -45.10) >DroPse_CAF1 107998 120 + 1 CAAAGCACGUGUGCGAUGUAGGUUUACUUCCAUCUCGGUUAAUUCUUUUUCCUCUUGGAUAUGCUGGUCCAGCCACUGCUUAGGUACUAAAGGGGGAGUUUUGAUCCGUUGUUUUAUAUC .((((((((...(.((((.(((....))).)))).)((((((..(((...((((((((((......)))).(((........)))....)))))))))..)))))))).))))))..... ( -28.70) >DroSim_CAF1 15935 120 + 1 AAGGGAACGAGUGCGAUGGAGAUUCACCUCCAUCUCGGUCAGUUCCUUCUCCUCCUGGAUUAGCUGAUCAAUGGAGUGUUUCGGCGAUAGGGCGGUUAUCUUCCGCUGCUGGCCGAUCUC .(((((((((.((.(((((((......))))))).)).)).)))))))...((((..((((....))))...))))....(((((..((((((((.......))))).)))))))).... ( -47.70) >DroEre_CAF1 12335 120 + 1 CAGGGAACGAGUGCGAUGGAGAUUCACCUCCAUCUCGGUCAGUUCCUUCUCCUCCUGGAUUAGCUGAUCAAUGGAGUGCUUCGGCGUUAGGGCGGUUAUCUUCCGCUGCUGGCCGAUCUC .(((((((((.((.(((((((......))))))).)).)).)))))))...((((..((((....))))...))))....(((((..((((((((.......))))).)))))))).... ( -47.70) >DroYak_CAF1 13318 120 + 1 CAGGGAACGUGUGCGAUGGAGAUUCACCUCCAUCUCGGUCAGUUCCUUCUCCUCCUGGAUCAGCUGAUCGAUGGAGUGUUUCGGCGAUAGGGCGGUUAUCUUCCGCUGCUGGCCGAUCUC .(((((((...((.(((((((......))))))).))....)))))))...(((((.((((....)))).).))))....(((((..((((((((.......))))).)))))))).... ( -46.20) >DroPer_CAF1 139951 120 + 1 CAAAGCACGUGUGCGAUGUAGGUUUACUUCCAUCUCGGUUAAUUCUUUUUCCUCUUGGAUAUGCUGGUCCAGCCACUGCUUAGGUAACAAAGGGGGAGUCUUGAUCCGCUGUUUUAUAUC .((((((.(((.(.((((.(((....))).)))).)((((((.....(((((((((((((......)))).(((........)))....)))))))))..)))))))))))))))..... ( -29.40) >consensus CAGGGAACGAGUGCGAUGGAGAUUCACCUCCAUCUCGGUCAGUUCCUUCUCCUCCUGGAUUAGCUGAUCAAUGGAGUGCUUCGGCGAUAGGGCGGUUAUCUUCCGCUGCUGGCCGAUCUC .(((((((...((.(((((((......))))))).))....))))))).(((....))).....................(((((.....((((((........)))))).))))).... (-26.35 = -25.22 + -1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:23 2006