Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,810,393 – 15,810,492 |
Length | 99 |
Max. P | 0.644464 |
Location | 15,810,393 – 15,810,492 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 93.54 |
Mean single sequence MFE | -26.50 |
Consensus MFE | -21.86 |
Energy contribution | -22.06 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.12 |
Mean z-score | -1.41 |
Structure conservation index | 0.82 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.644464 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15810393 99 - 22224390 UAAAACUCUGCAAGGACAACGUUGAGAACUUGAAAGCCGUAAUCCUUACAGGCUGUUGACUGCAGAGGAUCAUAAACCAAAUCUGGUUUCGGAUUCGCU .....(((((((.(..((((.(..(....)..).(((((((.....))).)))))))).))))))))((((..((((((....))))))..)))).... ( -28.10) >DroSec_CAF1 12048 99 - 1 UAAAACUCUGCAAGGACAACGUUGAGAACUUGAAAGCCGUAAUCCUUACGGGCUGUUGGCUGCAGAGGAUCAUAAACCAAAUCUGGUUUCGGAUUCGCU .....(((((((.(..((((.(..(....)..).(((((((.....))).)))))))).))))))))((((..((((((....))))))..)))).... ( -28.30) >DroSim_CAF1 11949 99 - 1 UAAAACUCUGCAAGGACAACGUUGAGAACUUGAAAGCCGUAAUCCUUACGGGCUGUUGACUGCAGAGGAUCAUAAACCAAAUCUGGUUUCGGAUUCGCU .....(((((((.(..((((.(..(....)..).(((((((.....))).)))))))).))))))))((((..((((((....))))))..)))).... ( -28.10) >DroEre_CAF1 10211 99 - 1 UAAAACUUUGCAAGGACAACGUUGAGAAUUUGAAAGCCGUAAUCCUUACGGGUUGUUGGCUGCAGAGGAUCAUAAACGAAAUAUGAUUUCGGAUUCGUU ...(((.(((......))).)))..((((((((.(((((..((((....))))...)))))......(((((((.......)))))))))))))))... ( -22.40) >DroYak_CAF1 11059 99 - 1 UAAAGCUUUGCAAGGACAAUGUUGAGAACUUGAAAGCCGUGAUCCUUACGGGUCGUUGGCUGCAGAGGAUCAUAAACGAAAUAUGAUUUCGGAUUCGCU ....(((((.((((..(........)..))))))))).(((((((((...(((.....)))...)))))))))...((((((...))))))........ ( -25.60) >consensus UAAAACUCUGCAAGGACAACGUUGAGAACUUGAAAGCCGUAAUCCUUACGGGCUGUUGGCUGCAGAGGAUCAUAAACCAAAUCUGGUUUCGGAUUCGCU .....(((((((.(..((((.(..(....)..).((((((((...)))).)))))))).))))))))((((..((((((....))))))..)))).... (-21.86 = -22.06 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:19 2006