Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,727,091 – 1,727,203 |
Length | 112 |
Max. P | 0.586611 |
Location | 1,727,091 – 1,727,203 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 82.56 |
Mean single sequence MFE | -39.41 |
Consensus MFE | -29.33 |
Energy contribution | -28.58 |
Covariance contribution | -0.74 |
Combinations/Pair | 1.31 |
Mean z-score | -1.49 |
Structure conservation index | 0.74 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.586611 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1727091 112 + 22224390 AGAGCUGUGGCUGGCAAUGCGAGUGGCAUCAAGGAGGCACUUCAACAGCACAUAAUGCCACUGGUGAGGACCCAAUACGUUAGUAGCCAUAGCUCAUGGCUUCCAAAGCUAG .((((((((((((.(...(((((((((((...(...((.........)).)...))))))))(((....))).....)))..))))))))))))).(((((.....))))). ( -42.00) >DroPse_CAF1 2076 112 + 1 AGGGUUGUCUCCGGCAAUGCCAAUGGGAUGAAGGAGGCGCUCCAGCAACACAUUCUGCCCCUGCUGCGGGUGCAGUACGUCAGUGGGCACAGCACCUGGCUGCCGAGGCUGG .((((.((((((..((...((....)).))..))))))))))((((..(......((((((((((((....)))).....))).)))))((((.....))))..)..)))). ( -41.80) >DroSim_CAF1 3244 112 + 1 AGAGCUGUGGCAGGCAAUGCGAGUGGCAUCAAGGAGGCACUUCAACAGCACAUAAUGCCACUGCUGAGGACCCAAUACGUUAGUAGCCAUAGCUCAUGGCUUCCAAAGCUAG .((((((((((.(((...((.((((((((...(...((.........)).)...))))))))))....).))...(((....))))))))))))).(((((.....))))). ( -41.30) >DroEre_CAF1 2021 112 + 1 AGAGCUGUGGCAGGCAAUGCGAGUGGCAUCAAGGAGGCACUCCAACAGCACAUAAUGCCACUGCUAAGGACCCAAUACGUUAAUAGCCAUAGCACAUGGCUUCCAAAGCUAG ...((((((((.......((.((((((((...((((...))))...........))))))))))...(....)............))))))))...(((((.....))))). ( -33.74) >DroYak_CAF1 2193 112 + 1 AGAGCUGUGACAGGCAAUGCAAGUGGCAUCAAGGAGGCACUCCAACAGCACAUAAUGCCAUUGCUAAGGACCCAAUACGUUAGCAGCCAUAGCACAUGGCUUCCAAAGCUAG ...((((((...((((((((.....))))...((((...))))............)))).(((((((.(........).))))))).))))))...(((((.....))))). ( -32.80) >DroPer_CAF1 2074 112 + 1 AGGGUUGUCUCCGGCAAUGCCAAUGGGAUGAAGGAGGCGCUCCAGCAACACAUUCUGCCCCUGCUGCGGGUGCAGUACGUCAGUGGGCACAGCGCCUGGCUGCCGCGGCUGG .((..(((((((..((...((....)).))..)))))))..)).(((........))).((.(((((((((((..(((....))).))))(((.....))).))))))).)) ( -44.80) >consensus AGAGCUGUGGCAGGCAAUGCGAGUGGCAUCAAGGAGGCACUCCAACAGCACAUAAUGCCACUGCUGAGGACCCAAUACGUUAGUAGCCAUAGCACAUGGCUUCCAAAGCUAG ...((((((((.((((((((.....))))...((((...))))............))))..((((((.(........).))))))))))))))...(((((.....))))). (-29.33 = -28.58 + -0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:37 2006