Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,808,803 – 15,808,923 |
Length | 120 |
Max. P | 0.815294 |
Location | 15,808,803 – 15,808,923 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.97 |
Mean single sequence MFE | -22.75 |
Consensus MFE | -14.26 |
Energy contribution | -14.58 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.21 |
Mean z-score | -1.83 |
Structure conservation index | 0.63 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.815294 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15808803 120 - 22224390 CUCAAAAGUCUAUAUUAUCUCAAAACCACUUUAAGUGUCCAAAAGCAUGCUUAGAAAGCAAAGUUUGCUCUUUUGCACACAACAAUGUAGCACACUUUUCUGCGCAUUUACUCAAGUAAG ...........................((((...((((.((((((((.((((........)))).))))..)))).))))...(((((.(((........)))))))).....))))... ( -18.90) >DroSec_CAF1 10717 116 - 1 CCCAUAAAUCUCUAUUAUCUCAAAACCACUUUAAGGGUCCAAAAGCAUGCUUAGAA----AAGCUUGUUCUUUUGAACACAACAAGGAAGCAGACUUUUCUGCGCUUUUACUUCAACAAG (((.((((.....................)))).)))...((((((..((((....----)))).(((((....)))))..........(((((....)))))))))))........... ( -21.10) >DroSim_CAF1 10599 120 - 1 CCCAUAAAUCUCUAUUAUCUCAAAACCACUUUAAGUGUCUAAAAGCAUGCUUAGAAAGCAAAGCUUGUUCUUUUGAACACAACAAGGAAGCAGACUUUUCUGCGCUUUUACUUCAACAAG ..........................(((.....)))..(((((((.((((.....)))).....(((((....)))))..........(((((....)))))))))))).......... ( -21.50) >DroYak_CAF1 9957 109 - 1 CAUAGAAAACUCUA------CAGGAC-----GCAGUGUCCAGAAGCAUGCCCAGAAAAGUAGGCUACUUCUUUUGCACACAAAAACGUAGCAUACUUUUCCGCGCAUUUGCCUAAUCCUC ..((((....))))------..((((-----.....))))....((((((.(.((((((((.(((((...(((((....)))))..))))).)))))))).).)))..)))......... ( -29.50) >consensus CCCAUAAAUCUCUAUUAUCUCAAAACCACUUUAAGUGUCCAAAAGCAUGCUUAGAAAGCAAAGCUUGUUCUUUUGAACACAACAAGGAAGCAGACUUUUCUGCGCAUUUACUUAAACAAG ..................................((((.((((((...((((........)))).....)))))).)))).........(((((....)))))................. (-14.26 = -14.58 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:17 2006