Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,782,217 – 15,782,319 |
Length | 102 |
Max. P | 0.892310 |
Location | 15,782,217 – 15,782,319 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.99 |
Mean single sequence MFE | -33.69 |
Consensus MFE | -18.20 |
Energy contribution | -19.13 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.15 |
Mean z-score | -2.71 |
Structure conservation index | 0.54 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.892310 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15782217 102 - 22224390 GGAAUAUAAGCAUUGAUAUUGUUAUCUAUAUGAUAGAGAAGAUCAUCCUCAUGGUCCAUAUGAUCC---------AUGCG---------AUCCAUGCGAUCCAUGCGGUCCAUACUGCAU .........(((.((((....(((((.....))))).....)))).....((((.((.((((((((---------(((..---------...)))).))).)))).)).))))..))).. ( -24.70) >DroSim_CAF1 13957 102 - 1 GGAAUAUAAGCAUUGAUAUUGUUAUCUAUAUGAUAGAGAAGAUCAUCCUCAUGGUCCAUAUGAUCC---------AUGUG---------GUCCAUGUGGUCCAUGUGGUCCAUACUGCAU (((..........((((....(((((.....))))).....)))).((.(((((.(((((((..((---------....)---------)..))))))).))))).)))))......... ( -32.80) >DroEre_CAF1 11891 120 - 1 GGAAUAUAAGCAUUGAUAUUGUUAUCUACAUGUUAGAGGAGAUCAUCCCCAUGGUCCAUCCGAUCCAUACGAUCCAUGUGGGCCAUGUGGGCCAUGUGGCCCAGGUGGUCCACACUGCAU (((.....(((((.((((....))))...)))))...(((((((((....))))))..)))..)))..........((((((((((.((((((....)))))).))))))))))...... ( -47.90) >DroYak_CAF1 11467 111 - 1 GGAAUAUAAGCAUUGAUAUUGUUAUCUACAUGGUAGAGAAGAUCAUUCCCAUGGUCCAUGUGAUCC---------AUGUGUUCUAUGUGGUCCAUGUGAUCUAUGUGAUCCAUACCGCAU ((((((((......((((....))))(((((((.......((....)).......)))))))....---------.))))))))(((((((..(((.((((.....)))))))))))))) ( -29.34) >consensus GGAAUAUAAGCAUUGAUAUUGUUAUCUACAUGAUAGAGAAGAUCAUCCCCAUGGUCCAUAUGAUCC_________AUGUG_________GUCCAUGUGAUCCAUGUGGUCCAUACUGCAU (((..........((((....(((((.....))))).....)))).((.(((((.(((((((..............................))))))).))))).)))))......... (-18.20 = -19.13 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:54 2006