Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,776,383 – 15,776,503 |
Length | 120 |
Max. P | 0.764074 |
Location | 15,776,383 – 15,776,503 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.33 |
Mean single sequence MFE | -39.88 |
Consensus MFE | -35.14 |
Energy contribution | -35.06 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.08 |
Mean z-score | -1.40 |
Structure conservation index | 0.88 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.764074 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15776383 120 - 22224390 AUGCGAGUGUUACAUCCACGAAUCUCUGGCCUGCUAGCAGCUGCGGAAAAGCAGCUCCAAUGCUGCCCAAAUGGCUGUUCCAGCGUACACAAAAUUCCUGUGUAGCGCCGCUCAUCGUAC ..(((.(((((((((....((((...(((..((((((((((((.((....(((((......)))))))...))))))))..))))..).))..))))..))))))))))))......... ( -37.00) >DroSec_CAF1 6977 120 - 1 AUGCGAGUGUUACGUCCACGAAUCUCUGGCCCGCCAGCAGCUGCGGAAAAGCAGCUCCAAUGCUGCCCAAAUGGCUGUUCCAGCGUACACAAAAUUCUUGUGUAGCGCCGCUCAUCGUAC .((((((((.......)))......((((....)))).(((.((((((..(((((......)))))((....))...)))).((.(((((((.....))))))))))).)))..))))). ( -38.70) >DroSim_CAF1 5414 120 - 1 AUGCGAGUGUUACGUCCACGAAUCUCUGGCCCGCCAGCAGCUGCGGAAAAGCAGCUCCAAUGCUGCCCAAAUGGCUGUUCCAGCGUACACAAAAUUCCUGUGUAGCGCCGCUCAUCGUAC .((((((((.......)))......((((....)))).(((.((((((..(((((......)))))((....))...)))).((.((((((.......)))))))))).)))..))))). ( -37.50) >DroEre_CAF1 6996 120 - 1 AGGCGAGUGUUACGUCCACGAAUCUCUGGCCUGCCAGCAGCUGCGGAAACGCAGCUCCAAUGCUGCCCAAAUGGCUGUUCCAGCGUACACAAAAUUCCUGGGUAGCGCCGCUCAUCGUAC ((((.((.(...((....))...).)).))))((..(((((((((....))))))).....((((((((....((((...))))(....)........)))))))))).))......... ( -45.30) >DroYak_CAF1 6643 120 - 1 AGGCGAGUGUUACGUCCACGAAUCUCUGGCCCGCCAGCAACUGCGGAAACGCAGCUCCAAUGCUGCCCAAGUGGCUGUUCCAGCGUACACAAAAUUCCUGGGUAGCGCCGCUCAUCGUAC .((((.(((((((..(((.(((((.((((..(((((((....))(....)(((((......))))).....)))).)..)))).)........)))).))))))))))))))........ ( -40.90) >consensus AUGCGAGUGUUACGUCCACGAAUCUCUGGCCCGCCAGCAGCUGCGGAAAAGCAGCUCCAAUGCUGCCCAAAUGGCUGUUCCAGCGUACACAAAAUUCCUGUGUAGCGCCGCUCAUCGUAC ..(((.((((((((..((.(((((.((((..(((((((....))((....(((((......)))))))...)))).)..)))).)........)))).)))))))))))))......... (-35.14 = -35.06 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:48 2006