Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,773,779 – 15,773,893 |
Length | 114 |
Max. P | 0.514649 |
Location | 15,773,779 – 15,773,893 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 90.92 |
Mean single sequence MFE | -25.90 |
Consensus MFE | -18.33 |
Energy contribution | -19.07 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.13 |
Mean z-score | -1.84 |
Structure conservation index | 0.71 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514649 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15773779 114 + 22224390 GUUAACUAGUGUAAGUUUAGCUGCGGAUGCUGUAGCAAAACAUUUUCGACACCUAACUAGACUUAUACUAUCAUUCUGAUCUAUUAUAUUAUACCAAUGUGCGUUUUACAUCUG ((.(((((((((((((((((((((((...)))))))....(......).........)))))))))))))..............((((((.....)))))).)))..))..... ( -21.60) >DroSec_CAF1 4351 114 + 1 GUUAACUAGUGUAAGUUUAGCUGCGGAUGCUGUAGCAAAACAUUUUCGACACCUAACUAGACUUAUACUAUCAUUCCGAUCUAUCAUAUUGUACCAAUGUGCGUUUUACAUCUG ((.(((((((((((((((((((((((...)))))))....(......).........)))))))))))))..............(((((((...))))))).)))..))..... ( -24.70) >DroEre_CAF1 4461 113 + 1 GUUACCAAGUGUAAGUUUAGUUGUGGAUGCUGUAG-AAAACAUUUUCGACAGCUAACUAGACUUAUACUAUGAUUCUGUUCUAUCAUAUCGUACUAAUAUGCGUUUUAUAUCCG .......((((((((((((((((.....(((((.(-(((....)))).)))))))))))))))))))))(((((........)))))..((((......))))........... ( -29.80) >DroYak_CAF1 4259 113 + 1 GUUAACUAGUGUAAGUUUAGCUGUGGAUGCUGUAG-AAAACAUUUGCGACAGCUAACUAGACUUAUACUAUGAUUAUGAUCUAUCAUAUCGUACUAAUAUGCGUUUUACAUCCG ((.(((.(((((((((((((((((.(....(((..-...)))....).)))))))....))))))))))(((((.((((....)))))))))..........)))..))..... ( -27.50) >consensus GUUAACUAGUGUAAGUUUAGCUGCGGAUGCUGUAG_AAAACAUUUUCGACACCUAACUAGACUUAUACUAUCAUUCUGAUCUAUCAUAUCGUACCAAUAUGCGUUUUACAUCCG ......(((((((((((((((((((((...(((......)))..)))).))))))....)))))))))))..............((((((.....))))))............. (-18.33 = -19.07 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:42 2006