Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,738,714 – 15,738,834 |
Length | 120 |
Max. P | 0.810395 |
Location | 15,738,714 – 15,738,834 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.05 |
Mean single sequence MFE | -24.42 |
Consensus MFE | -15.74 |
Energy contribution | -18.14 |
Covariance contribution | 2.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.87 |
Structure conservation index | 0.64 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.810395 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15738714 120 - 22224390 UUAACUUAAUCCUGUAACUUAAUCGUUUCUUGGAAACGGGACAGCUGAUGAUUCCACAAAUCCGAGAAUCCGGAUGGGGAAUAUGUACAUACAUACAAAUAACAUGUUUCUUACAGAAAU ...........((((((...((((((((((((....))))).....)))))))(((....((((......)))))))(((((((((...............))))))))))))))).... ( -27.26) >DroSec_CAF1 11413 120 - 1 UUAACUUAAUCCUGUAACUUAAUCGUUUCUUGGAAACGGGACAGCUGAUGAUUCCACAAAUCCGAGCAUCCGGAUGGGGAAUAUGUACAUACAUACAAAUAACAUGUUUCUUACAGAAAU ...........((((((...((((((((((((....))))).....)))))))(((....((((......)))))))(((((((((...............))))))))))))))).... ( -27.26) >DroSim_CAF1 11877 120 - 1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACGGGACAGCUGAUGAUUCCACAAAUCCGAGCAUCCGGAUGGGGAAUAUGUACAUACAUACAAAUAACAUGUUUCUUACAGAAAU .....................................(..(((.......(((((....(((((......)))))..))))).((((......)))).......)))..).......... ( -18.30) >DroEre_CAF1 11306 104 - 1 UUAACUUAAUCCUGUAACUUAAUCGUUUCUUGGAAACGGGACAGCUGAUGAUUCCACAAAUCCGAGAAUACGGAUGGGGAAUA----------------UAACAUUUUUCUUACAGAAAU ...........((((((....(((((((((((....))))).))).))).(((((....(((((......)))))..))))).----------------...........)))))).... ( -26.20) >DroYak_CAF1 11206 104 - 1 UUAACUUAAUCCUGUAACUUAAUCGUUUCUUGGAAACGGGACAGCUGAUGAUUCCACAAAUCCGAGAAUCCGGAUGGAGAAUA----------------UAACAUUUUUCUUACAGAAAU ...........((((((....(((((((((((....))))).))).)))..(((((....((((......)))))))))....----------------...........)))))).... ( -23.10) >consensus UUAACUUAAUCCUGUAACUUAAUCGUUUCUUGGAAACGGGACAGCUGAUGAUUCCACAAAUCCGAGAAUCCGGAUGGGGAAUAUGUACAUACAUACAAAUAACAUGUUUCUUACAGAAAU ...........((((((..........(((((....))))).........(((((....(((((......)))))..)))))............................)))))).... (-15.74 = -18.14 + 2.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:12 2006