Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,712,516 – 15,712,610 |
Length | 94 |
Max. P | 0.520862 |
Location | 15,712,516 – 15,712,610 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 76.65 |
Mean single sequence MFE | -24.83 |
Consensus MFE | -18.17 |
Energy contribution | -17.70 |
Covariance contribution | -0.47 |
Combinations/Pair | 1.48 |
Mean z-score | -0.84 |
Structure conservation index | 0.73 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.520862 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15712516 94 - 22224390 UCUCCAUUUGGACGCUAUGUGACUCCGUUUGGAUUCACAGGGCUAACGCAUUUUGGUGGCCACUUGGACUCGUGGAGGUAAAUAAAUGAAAUUA (((((((..(..(....(((((.(((....))).))))).(((((.((.....)).)))))....)..)..)))))))................ ( -26.70) >DroSec_CAF1 2 75 - 1 UCUCCAUUUGGACGCUAUGUGACUCCGUUUGGAUUCACAGGGCUAACGCAUUUUGGUGGCCACUUGGACUCGUGG------------------- ..((((..(((.((((((((((.(((....))).)))))..((....))....))))).)))..)))).......------------------- ( -26.00) >DroSim_CAF1 761 94 - 1 UCUCCAUUUGGACGCUAUGUGACUCCGUUUGGAUUCACAGGGCUAACGCAUUUUGGUGGCCACUUGGACUCGUGGAGGUAAAUAAAUGAAAUUU (((((((..(..(....(((((.(((....))).))))).(((((.((.....)).)))))....)..)..)))))))................ ( -26.70) >DroYak_CAF1 11887 90 - 1 UCUCCAUUUGGACGCUAUGUGACACCGUUUGGAUUCACAGGGCUAACGCAUUUCGGUGGCCACUUGGACUCGUGGAGGUAAAUAAACUAA---- (((((((..(....(((.(((.(((((((((......))))((....))....)))))..))).))).)..)))))))............---- ( -26.00) >DroAna_CAF1 106879 94 - 1 UCGCCGUUUGGACGUUAUGUUAAUCCCUUCGGAUUUCCGGGGCUCACGCAUUUUGGUGGUCAUAUAGAUGCAUGGAGGUAAUUUAUUUAUCAUU ...((((...((.((..((..(((((....)))))..))..))))..((((((..((....))..)))))))))).(((((.....)))))... ( -18.80) >DroPer_CAF1 225020 93 - 1 UCUCCUUUUGGACGCUAUGUAGCUCCAUUUGGGUUCACGGGUAUGACGCAUUUCGGCGGACAUAUAGACGCAUGGAGGUAAGUGAU-GUCAUGU ..........((((.(((.((.(((((..((.(((.....(((((.(((......)))..))))).))).))))))).)).))).)-))).... ( -24.80) >consensus UCUCCAUUUGGACGCUAUGUGACUCCGUUUGGAUUCACAGGGCUAACGCAUUUUGGUGGCCACUUGGACUCGUGGAGGUAAAUAAAUGAAAUUU .((((((..(....((((((((.(((....))).))))).(((((.((.....)).)))))...))).)..))))))................. (-18.17 = -17.70 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:35 2006