Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,710,389 – 15,710,489 |
Length | 100 |
Max. P | 0.810989 |
Location | 15,710,389 – 15,710,489 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 100.00 |
Mean single sequence MFE | -24.00 |
Consensus MFE | -24.00 |
Energy contribution | -24.00 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.47 |
Structure conservation index | 1.00 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638332 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15710389 100 + 22224390 UUAAACACGUAAUGCACAAAGGGAAUGAAGCUGUCACUGAUAUACAUAGAGUUAUGUAUCAUGUGCAUGAUAGUUUGGAUUCCAUAGGCUGCAUGUUGAU .......((..((((((....(((((.(((((((((.((..(((((((....)))))))......))))))))))).).))))....).)))))..)).. ( -24.00) >DroSec_CAF1 21523 100 + 1 UUAAACACGUAAUGCACAAAGGGAAUGAAGCUGUCACUGAUAUACAUAGAGUUAUGUAUCAUGUGCAUGAUAGUUUGGAUUCCAUAGGCUGCAUGUUGAU .......((..((((((....(((((.(((((((((.((..(((((((....)))))))......))))))))))).).))))....).)))))..)).. ( -24.00) >DroEre_CAF1 21504 100 + 1 UUAAACACGUAAUGCACAAAGGGAAUGAAGCUGUCACUGAUAUACAUAGAGUUAUGUAUCAUGUGCAUGAUAGUUUGGAUUCCAUAGGCUGCAUGUUGAU .......((..((((((....(((((.(((((((((.((..(((((((....)))))))......))))))))))).).))))....).)))))..)).. ( -24.00) >consensus UUAAACACGUAAUGCACAAAGGGAAUGAAGCUGUCACUGAUAUACAUAGAGUUAUGUAUCAUGUGCAUGAUAGUUUGGAUUCCAUAGGCUGCAUGUUGAU .......((..((((((....(((((.(((((((((.((..(((((((....)))))))......))))))))))).).))))....).)))))..)).. (-24.00 = -24.00 + 0.00)
Location | 15,710,389 – 15,710,489 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 100.00 |
Mean single sequence MFE | -18.70 |
Consensus MFE | -18.70 |
Energy contribution | -18.70 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.74 |
Structure conservation index | 1.00 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.810989 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15710389 100 - 22224390 AUCAACAUGCAGCCUAUGGAAUCCAAACUAUCAUGCACAUGAUACAUAACUCUAUGUAUAUCAGUGACAGCUUCAUUCCCUUUGUGCAUUACGUGUUUAA ...((((((.......(((...))).......(((((((..(((((((....)))))))...(((((.....))))).....)))))))..))))))... ( -18.70) >DroSec_CAF1 21523 100 - 1 AUCAACAUGCAGCCUAUGGAAUCCAAACUAUCAUGCACAUGAUACAUAACUCUAUGUAUAUCAGUGACAGCUUCAUUCCCUUUGUGCAUUACGUGUUUAA ...((((((.......(((...))).......(((((((..(((((((....)))))))...(((((.....))))).....)))))))..))))))... ( -18.70) >DroEre_CAF1 21504 100 - 1 AUCAACAUGCAGCCUAUGGAAUCCAAACUAUCAUGCACAUGAUACAUAACUCUAUGUAUAUCAGUGACAGCUUCAUUCCCUUUGUGCAUUACGUGUUUAA ...((((((.......(((...))).......(((((((..(((((((....)))))))...(((((.....))))).....)))))))..))))))... ( -18.70) >consensus AUCAACAUGCAGCCUAUGGAAUCCAAACUAUCAUGCACAUGAUACAUAACUCUAUGUAUAUCAGUGACAGCUUCAUUCCCUUUGUGCAUUACGUGUUUAA ...((((((.......(((...))).......(((((((..(((((((....)))))))...(((((.....))))).....)))))))..))))))... (-18.70 = -18.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:32 2006