Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,706,940 – 15,707,060 |
Length | 120 |
Max. P | 0.820208 |
Location | 15,706,940 – 15,707,060 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.39 |
Mean single sequence MFE | -44.40 |
Consensus MFE | -43.10 |
Energy contribution | -43.10 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.05 |
Mean z-score | -1.83 |
Structure conservation index | 0.97 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.820208 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15706940 120 + 22224390 CGGCAAUUGGGCAAGGAUUUCGGUACACCGAAUCCAUUGGAGCACGAUCUGCGCUAUCUGCUGGAAACAGGUGAUUAUGCUGACGCAGCACUCGUCUUCACGGCAGAUGGCAGCAACGAC ..((......(((.(((((.(((....))))))))((((.....)))).)))((((((((((((((((..(((....(((....))).)))..)).))).))))))))))).))...... ( -46.20) >DroSec_CAF1 18126 120 + 1 CGGCAAUUGGGCAAGGAUUUCGGUACUCCGAAUCCACUGGAGCACGAUCUGCGCUAUCUGCUGGAAACAGGUGAUUAUGCUGACGCAGCACUCGUCUUCACGGCAGAUGGUAGCAACGAC ((((..(..(....(((((.(((....)))))))).)..).)).))...(((((((((((((((((((..(((....(((....))).)))..)).))).))))))))))).)))..... ( -43.10) >DroEre_CAF1 18026 120 + 1 CGGCAAUUGGGCAAGGAUUUCGGUACUCCGAAUCCGCUGGAGCACGAUCUGCGCUAUCUGCUGGAAACAGGUGAUUAUGCUGACGCAGCGCUCGUUUUCACGGCAGAUGGAAGCAACGAC ((((..((.(((..(((((.(((....))))))))))).)))).))...(((.(((((((((((((((..(((....(((....))).)))..).)))).))))))))))..)))..... ( -43.90) >consensus CGGCAAUUGGGCAAGGAUUUCGGUACUCCGAAUCCACUGGAGCACGAUCUGCGCUAUCUGCUGGAAACAGGUGAUUAUGCUGACGCAGCACUCGUCUUCACGGCAGAUGGAAGCAACGAC (((((((((.((..(((((.(((....))))))))......)).)))).)))((((((((((((((((..(((....(((....))).)))..)).))).))))))))))).....)).. (-43.10 = -43.10 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:22 2006