Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,688,710 – 1,688,812 |
Length | 102 |
Max. P | 0.999537 |
Location | 1,688,710 – 1,688,812 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 93.85 |
Mean single sequence MFE | -24.44 |
Consensus MFE | -22.32 |
Energy contribution | -22.72 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.07 |
Mean z-score | -2.31 |
Structure conservation index | 0.91 |
SVM decision value | 3.70 |
SVM RNA-class probability | 0.999537 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1688710 102 + 22224390 UACACUUCUCGAAACUGGAAUCUAGAUU-----UCUAGAACUCAACCUAAUCCACUUUCGGCUGAGAAAUAGAACAGCAUUGGCAUUUCCAAAAAAGUCUCGGCUCU .........(((((.((((.(((((...-----.)))))...........)))).)))))(((((((....(((..((....))..)))........)))))))... ( -22.30) >DroSec_CAF1 28914 102 + 1 UACACUUCUCGAAACUGGAAUCUAGAUU-----UCUAGAACUCAACCUAAUCUACUUUCGGCUGAGAAAUGGAGCAGCAUUGGCAUUUCCAAAAAAGUCUCGGCUCU .........(((((.((((.(((((...-----.)))))...........)))).)))))(((((((..(((((..((....))..)))))......)))))))... ( -24.80) >DroSim_CAF1 22987 102 + 1 UACACUUCUCGAAACUGGAAUCUAGAUU-----UCUAGAACUCAACCUAAUCUACUUUCGGCUGAGAAAUGGAGCAGCAUUGGCAUUUCCAAAAAAGUCUCGGCUCU .........(((((.((((.(((((...-----.)))))...........)))).)))))(((((((..(((((..((....))..)))))......)))))))... ( -24.80) >DroEre_CAF1 24688 101 + 1 UACACUUCUCGAAACUGUUAUCUAGAUU-----UCUAGAACUCAACCUAAUCCACUUUCGGCUGAGAAAUGGAGCAGCAUUGGCAUUUCCAAAAUAGUCUCGGCUC- ........((((.((((((.(((((...-----.))))).((((.((.((......)).)).))))...(((((..((....))..))))).)))))).))))...- ( -24.60) >DroYak_CAF1 22639 107 + 1 UACACUUCUCGAAACUGGAAUCUAGAUCUAGAAUCUAGAACUCAACCUAAUCCACUUUCGGCUGAGAAAUGGAGCAGCAUUGGCAUUUCCAAAAUAUUCUCGCCUCU ..........((((.((((.(((((((.....)))))))...........)))).))))(((.(((((.(((((..((....))..))))).....))))))))... ( -25.70) >consensus UACACUUCUCGAAACUGGAAUCUAGAUU_____UCUAGAACUCAACCUAAUCCACUUUCGGCUGAGAAAUGGAGCAGCAUUGGCAUUUCCAAAAAAGUCUCGGCUCU .........(((((.((((.((((((.......))))))...........)))).)))))(((((((..(((((..((....))..)))))......)))))))... (-22.32 = -22.72 + 0.40)
Location | 1,688,710 – 1,688,812 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 93.85 |
Mean single sequence MFE | -26.90 |
Consensus MFE | -24.82 |
Energy contribution | -24.86 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.24 |
Structure conservation index | 0.92 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.792296 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1688710 102 - 22224390 AGAGCCGAGACUUUUUUGGAAAUGCCAAUGCUGUUCUAUUUCUCAGCCGAAAGUGGAUUAGGUUGAGUUCUAGA-----AAUCUAGAUUCCAGUUUCGAGAAGUGUA .....(((((((..((((((...((....))..(((((...(((((((............)))))))...))))-----).))))))....)))))))......... ( -25.60) >DroSec_CAF1 28914 102 - 1 AGAGCCGAGACUUUUUUGGAAAUGCCAAUGCUGCUCCAUUUCUCAGCCGAAAGUAGAUUAGGUUGAGUUCUAGA-----AAUCUAGAUUCCAGUUUCGAGAAGUGUA .....(((((((....((((...((....))...))))...(((((((............))))))).(((((.-----...)))))....)))))))......... ( -25.90) >DroSim_CAF1 22987 102 - 1 AGAGCCGAGACUUUUUUGGAAAUGCCAAUGCUGCUCCAUUUCUCAGCCGAAAGUAGAUUAGGUUGAGUUCUAGA-----AAUCUAGAUUCCAGUUUCGAGAAGUGUA .....(((((((....((((...((....))...))))...(((((((............))))))).(((((.-----...)))))....)))))))......... ( -25.90) >DroEre_CAF1 24688 101 - 1 -GAGCCGAGACUAUUUUGGAAAUGCCAAUGCUGCUCCAUUUCUCAGCCGAAAGUGGAUUAGGUUGAGUUCUAGA-----AAUCUAGAUAACAGUUUCGAGAAGUGUA -....(((((((....((((...((....))...))))...(((((((............))))))).(((((.-----...)))))....)))))))......... ( -26.50) >DroYak_CAF1 22639 107 - 1 AGAGGCGAGAAUAUUUUGGAAAUGCCAAUGCUGCUCCAUUUCUCAGCCGAAAGUGGAUUAGGUUGAGUUCUAGAUUCUAGAUCUAGAUUCCAGUUUCGAGAAGUGUA ...((((((((.....((((...((....))...)))).))))).)))((((.((((...........((((((((...)))))))).)))).)))).......... ( -30.60) >consensus AGAGCCGAGACUUUUUUGGAAAUGCCAAUGCUGCUCCAUUUCUCAGCCGAAAGUGGAUUAGGUUGAGUUCUAGA_____AAUCUAGAUUCCAGUUUCGAGAAGUGUA .....(((((((....((((...((....))...))))...(((((((............))))))).((((((.......))))))....)))))))......... (-24.82 = -24.86 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:28 2006