Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,699,918 – 15,700,031 |
Length | 113 |
Max. P | 0.678875 |
Location | 15,699,918 – 15,700,031 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 99.56 |
Mean single sequence MFE | -26.75 |
Consensus MFE | -25.35 |
Energy contribution | -25.35 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.07 |
Structure conservation index | 0.95 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678875 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15699918 113 + 22224390 UAUAUCAUUUAAUGUACGUGUGCACAUAUGUACAUGCCGAAAACAUUAAUUAAGAGUU-UGGUCUGUCAGGAUUAACGGGUUAAUAAAACUGGCAUGCUAAUAGUCAUACAUUU ..........((((((((((((((....)))))))).................((.((-((((.((((((.(((((....)))))....)))))).))))).).)).)))))). ( -26.40) >DroSec_CAF1 10967 113 + 1 UAUAUCAUUUAAUGUACGUGUGCACAUAUGUACAUGCCGAAAACAUUAAUUAAGAGUU-UGGUCUGUCAGGAUUAACGGGUUAAUAAAACUGGCAUGCUAAUAGUCAUACAUUU ..........((((((((((((((....)))))))).................((.((-((((.((((((.(((((....)))))....)))))).))))).).)).)))))). ( -26.40) >DroEre_CAF1 10645 113 + 1 UAUAUCAUUUAAUGUACGUGUGCACAUAUGUACAUGCCGAAAACAUUAAUUAAGAGUU-UGGUCUGUCAGGAUUAACGGGUUAAUAAAACUGGCAUGCUAAUAGUCAUACAUUU ..........((((((((((((((....)))))))).................((.((-((((.((((((.(((((....)))))....)))))).))))).).)).)))))). ( -26.40) >DroYak_CAF1 10768 114 + 1 UAUAUCAUUUAAUGUACGUGUGCACAUAUGUACAUGCCGAAAACAUUAAUUAAGAGUUUUGGUCUGUCAGGAUUAACGGGUUAAUAAAACUGGCAUGCUAAUAGUCAUACAUUU ..........((((((((((((((....)))))))).................((.(.(((((.((((((.(((((....)))))....)))))).))))).).)).)))))). ( -27.80) >consensus UAUAUCAUUUAAUGUACGUGUGCACAUAUGUACAUGCCGAAAACAUUAAUUAAGAGUU_UGGUCUGUCAGGAUUAACGGGUUAAUAAAACUGGCAUGCUAAUAGUCAUACAUUU ..........((((((((((((((....)))))))).................((.(..((((.((((((.(((((....)))))....)))))).))))..).)).)))))). (-25.35 = -25.35 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:07 2006