Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,690,750 – 15,690,840 |
Length | 90 |
Max. P | 0.979085 |
Location | 15,690,750 – 15,690,840 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 76.13 |
Mean single sequence MFE | -32.13 |
Consensus MFE | -20.84 |
Energy contribution | -21.23 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.17 |
Mean z-score | -2.22 |
Structure conservation index | 0.65 |
SVM decision value | 1.83 |
SVM RNA-class probability | 0.979085 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15690750 90 - 22224390 --------------------AACAAAAGCG------GUAAAACUAGCAUCGGUGCAGUGCAUCCGAACUAUGGAUUCGGCAAACGCUGGUCCAAGUCCGAGGAUGUGUUGCUCAAG --------------------.......(((------(.....)).))....(.((((..(((((..(((.(((((.((((....))))))))))))....)))))..)))).)... ( -30.30) >DroSec_CAF1 1742 90 - 1 --------------------AACAAGAGCG------GUAAGACGAACAUCGGUGCAGUGCAUCCGAACUAUGGAUUCGGCAAACGCUGGUCCAAGUCCGAGGAUGUGCUGCUCAAG --------------------.....((((.------(((...((.....)).)))((..(((((..(((.(((((.((((....))))))))))))....)))))..))))))... ( -34.70) >DroSim_CAF1 1746 90 - 1 --------------------AACAAGAGCG------GUAAGACGAACAUCGGUGCAGUGCAUCCGAACUAUGGAUUCGGCAAACGCUGGUCCAAGUCUGAGGAUGUGCUGCUCAAG --------------------.....((((.------(((...((.....)).)))((..(((((..(((.(((((.((((....))))))))))))....)))))..))))))... ( -34.70) >DroEre_CAF1 1754 96 - 1 --------------------AACAAGAGCGGCGGCAGUAGGAUCAGCAUAGGUGCAGUGCAUCCGAACUAUGGAUUCGGCAAACGCUGGUCCAAGUCCGAGGAUGUGCGGCUCAAG --------------------.....((((.(((......((((((((...(((((...)))))(((((....).))))......))))))))..(((....))).))).))))... ( -34.60) >DroYak_CAF1 1758 96 - 1 --------------------AACAAGAGUGGAGGCAGUAGGAACAGCAUGGGUGCAGUGCAUCCGAACUAUGGAUUCGGCAAACGCUGGUCCAAGUCCGAGGAUGUGCGGCUCAAG --------------------..........(((.(..........(((....))).(..(((((..(((.(((((.((((....))))))))))))....)))))..)).)))... ( -32.30) >DroPer_CAF1 1673 108 - 1 CAGCCUCCGAAGGGAACUCAAAUAAAGGU--------UGCGAACAAUAAUGGCUCUGGACAUCCGAACUACGGAUUUGGAAAGCGGUGGUCAAAAUCGGAAGAUGUUUUGCUCAAA ((((((((....)))...........)))--------)).((.(((...((((((((....(((((((....).))))))...))).)))))..(((....)))...))).))... ( -26.20) >consensus ____________________AACAAGAGCG______GUAAGACCAACAUCGGUGCAGUGCAUCCGAACUAUGGAUUCGGCAAACGCUGGUCCAAGUCCGAGGAUGUGCUGCUCAAG ...................................................(.((.((((((((..(((.(((((.((((....))))))))))))....)))))))).)).)... (-20.84 = -21.23 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:57 2006