Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,677,761 – 15,677,890 |
Length | 129 |
Max. P | 0.820181 |
Location | 15,677,761 – 15,677,862 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 80.33 |
Mean single sequence MFE | -22.50 |
Consensus MFE | -15.49 |
Energy contribution | -15.39 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.37 |
Mean z-score | -1.39 |
Structure conservation index | 0.69 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.641005 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15677761 101 + 22224390 UUAAACAC--AUUGGG--GGUCAUAAACUCACCUUCUUUAGGAUAAACAGGCGGUUCUUCAGCUUCUUAUUUUCAAUUUGAAGCUGAACAAGAUCGACGUCCAAC ........--.(((((--.(((.........(((.....)))..........((((.(((((((((..((.....))..)))))))))...))))))).))))). ( -27.20) >DroSec_CAF1 5363 101 + 1 UGAAACAC--AUUGGG--GGCCAUAAACUCACCUUCUUUAGGAUGAACAGGCGGUUCUUCAGCUUCUUAUUUUCAAUUUGAAGCUGAACAAGAUCGACGUCCAAC ........--.....(--(((.......((((((.....))).)))...(.(((((.(((((((((..((.....))..)))))))))...))))).)))))... ( -25.20) >DroSim_CAF1 2110 101 + 1 UGAAACAC--AUUGGG--GGCCAUAAACUCACCUUCUUUAGGAUGAACAGGCGGUUCUUCAGCUUCUUAUUUUCAAUUUGAAGCUGAACAAGAUCGACGUCCAAC ........--.....(--(((.......((((((.....))).)))...(.(((((.(((((((((..((.....))..)))))))))...))))).)))))... ( -25.20) >DroEre_CAF1 4349 100 + 1 UUAAACAC--AUU-GG--GGUCAUAAACUUACCUUCUUCAGGAUAAAAAGGCGGUUCUUAAGCUUCUUAUUUUCAAUUUGAAGCUGAACAAGAUCGACGUCCAAC ........--.((-((--((((.........(((.....)))...........((((...((((((..((.....))..))))))))))......))).))))). ( -19.80) >DroYak_CAF1 2110 101 + 1 UUAAACAC--GUCAAG--GGUCAUAAACUCACCUUCUUCAGGAUGAACAAGCGGUUCUUCAACUUCUUAUUUUCAAUUUGAAGUUGAACAAGAUCGACGUCCAAC ......((--(((..(--(((.....))))...........(((((((.....))))(((((((((..((.....))..)))))))))....))))))))..... ( -22.00) >DroPer_CAF1 192373 105 + 1 CUAAAUAGUAAUUAUUAAUUUAAGUUACUUACCUGCCUAAUUAUGGAUAAACGAUGUUUGAGCUUGGUAUUUUUAAGUUGGAGUUUGAUCAGAUCAUCGUCAGUU ......(((((((.........)))))))...(((((.......))....(((((((((((((((((.....))))))..........))))).))))))))).. ( -15.60) >consensus UUAAACAC__AUUGGG__GGUCAUAAACUCACCUUCUUUAGGAUGAACAGGCGGUUCUUCAGCUUCUUAUUUUCAAUUUGAAGCUGAACAAGAUCGACGUCCAAC ........................................(((((......(((((.(((((((((.............)))))))))...))))).)))))... (-15.49 = -15.39 + -0.11)
Location | 15,677,794 – 15,677,890 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 78.79 |
Mean single sequence MFE | -23.52 |
Consensus MFE | -15.49 |
Energy contribution | -15.39 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.37 |
Mean z-score | -1.67 |
Structure conservation index | 0.66 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.820181 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15677794 96 + 22224390 UUAGGAUAAACAGGCGGUUCUUCAGCUUCUUAUUUUCAAUUUGAAGCUGAACAAGAUCGACGUCCAAC---------UGUUCACCGCUUUUGGCAGUUUGUAUUC .....((((((.(.(((((.(((((((((..((.....))..)))))))))...))))).)(.((((.---------.((.....))..))))).)))))).... ( -24.10) >DroSec_CAF1 5396 96 + 1 UUAGGAUGAACAGGCGGUUCUUCAGCUUCUUAUUUUCAAUUUGAAGCUGAACAAGAUCGACGUCCAAC---------UGUUCACCAUUUUUGGCAGUUUGUAUUC ...((.(((((((.(((((.(((((((((..((.....))..)))))))))...)))))........)---------)))))))).................... ( -26.50) >DroSim_CAF1 2143 96 + 1 UUAGGAUGAACAGGCGGUUCUUCAGCUUCUUAUUUUCAAUUUGAAGCUGAACAAGAUCGACGUCCAAC---------UGUUCACCACUUUUGGCAGUUUGUAUUC ...((.(((((((.(((((.(((((((((..((.....))..)))))))))...)))))........)---------)))))))).................... ( -26.50) >DroEre_CAF1 4381 96 + 1 UCAGGAUAAAAAGGCGGUUCUUAAGCUUCUUAUUUUCAAUUUGAAGCUGAACAAGAUCGACGUCCAAC---------UGCUCACAAUGUUCGGCAGUUUGUAUUC ...(((((....((((..((((.((((((..((.....))..))))))....))))....)))).(((---------((((..........)))))))..))))) ( -21.30) >DroYak_CAF1 2143 96 + 1 UCAGGAUGAACAAGCGGUUCUUCAACUUCUUAUUUUCAAUUUGAAGUUGAACAAGAUCGACGUCCAAC---------UGCUCACCAUUUUUGGCAGUUUGUAUUC ...(((((......(((((.(((((((((..((.....))..)))))))))...))))).)))))(((---------(((.((.......))))))))....... ( -25.20) >DroPer_CAF1 192410 105 + 1 UAAUUAUGGAUAAACGAUGUUUGAGCUUGGUAUUUUUAAGUUGGAGUUUGAUCAGAUCAUCGUCAGUUUCAGCAUAGUGAUCUUUUCCUGUUACAGACUUUACUU ..................((((((((((((.....)))))))((((...((((((((....))).((....))....)))))..)))).....)))))....... ( -17.50) >consensus UUAGGAUGAACAGGCGGUUCUUCAGCUUCUUAUUUUCAAUUUGAAGCUGAACAAGAUCGACGUCCAAC_________UGUUCACCACUUUUGGCAGUUUGUAUUC ...(((((......(((((.(((((((((.............)))))))))...))))).)))))........................................ (-15.49 = -15.39 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:36 2006