Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,666,285 – 15,666,397 |
Length | 112 |
Max. P | 0.925498 |
Location | 15,666,285 – 15,666,397 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 79.40 |
Mean single sequence MFE | -40.35 |
Consensus MFE | -27.19 |
Energy contribution | -26.08 |
Covariance contribution | -1.11 |
Combinations/Pair | 1.50 |
Mean z-score | -2.15 |
Structure conservation index | 0.67 |
SVM decision value | 1.17 |
SVM RNA-class probability | 0.925498 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15666285 112 - 22224390 CCUUCGCAUGGCCGUGCGCAACAAUUUGGCUGGUGCCGAAGAUCUCUUUGUGCGAAAGUUCAACAAGCUCUUUACAGCCGGCCAGUAUGCUGAAGCGGCUAAAGUUGCUGCC .....((((((((((...((.((..(((((((((...(((((.((..(((.((....)).)))..)).)))))...)))))))))..)).))..)))))))....))).... ( -42.80) >DroGri_CAF1 4078 112 - 1 UUUACGCAUGGCUGUACGCAACAAUUUGGCCGGCGCCGAGGAUCUAUUUGUGCGUAAAUUCAAUAAACUCUUCACCGCCGGCCAAUAUGCCGAGGCGGCCAAGGUUGCCGCA .....((.(((((((.....)))..((((((((((..(((((.....(((..........))).....)))))..))))))))))...)))).((((((....)))))))). ( -43.60) >DroWil_CAF1 4101 112 - 1 AUUACGAAUGGCAGUGCGCAACAAUUUGGCCGGUGCCGAAGAUUUGUUUGUACGCAAAUUUAAUAAACUCUUCACCGCCGGUCAAUAUGCCGAAGCCGCCAAAGUGGCCGCC ....((..(((((((.....))...((((((((((..(((((...((((((...........)))))))))))..))))))))))..)))))..(((((....))))))).. ( -36.90) >DroMoj_CAF1 4054 112 - 1 CCUGCGCAUGGCCGUGCGCAACAAUUUGGCUGGCGCUGAGGAUCUGUUUGUGCGCAAAUUCAAUAAGCUCUUUGGCGCUGGCCAAUACGCCGAGGCGGCCAAGGUGGCUGCA ..(((((((....))))))).....(((((..((((..((((.(((((((....)))))......)).))))..))))..))))).........((((((.....)))))). ( -51.80) >DroAna_CAF1 11915 112 - 1 GCUACGCAUGGCUGUUCGUAAUAAUUUGGCCGGUGCCGAAGAACUUUUUGUACGCAAGUUUAAUAAGCUAUUUACAGCAGGUCAAUAUGCUGAAGCUGCAAAAGUAGCUGCU ((((((((((((((............))))).)))).........(((((((.((.((((.....)))).....(((((........)))))..)))))))))))))).... ( -31.00) >DroPer_CAF1 87226 112 - 1 CCUGCGAAUGGCUGUACGAAACAAUUUAGCAGGAGCGGAGGAUCUUUUUGUCCGCAAGUUCAACAAGCUGUUUACUGCCGGUCAGUUCGCCGAAGCGGCCAAAGUUGCUGCU ...((((.(((((((.............((((..(((((.((.....)).))))).((((.....)))).....))))((((......))))..)))))))...)))).... ( -36.00) >consensus CCUACGCAUGGCUGUGCGCAACAAUUUGGCCGGUGCCGAAGAUCUGUUUGUGCGCAAAUUCAAUAAGCUCUUUACCGCCGGCCAAUAUGCCGAAGCGGCCAAAGUUGCUGCA ........((((.((.....))...((((((((((..(((((.((..(((..........)))..)).)))))..))))))))))...)))).((((((....))))))... (-27.19 = -26.08 + -1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:35 2006