Locus 6108

Sequence ID X_DroMel_CAF1
Location 15,652,925 – 15,653,033
Length 108
Max. P 0.862298
window9926

overview

Window 6

Location 15,652,925 – 15,653,033
Length 108
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 94.94
Mean single sequence MFE -22.20
Consensus MFE -18.16
Energy contribution -19.00
Covariance contribution 0.84
Combinations/Pair 1.04
Mean z-score -1.78
Structure conservation index 0.82
SVM decision value 0.83
SVM RNA-class probability 0.862298
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15652925 108 - 22224390
AGCAAAUUAAAAUUCUUUGCAAAUGAAUAGAAACUUAAAUAGUUUCAACACACCAUUGUUUACGUUUUCGUUUAGUGAAUAUUUGGAAAGGGUUGAACGGCAUUAAGC
.((.......((((((((.((((((....((((((.....)))))).......(((((...(((....))).)))))..)))))).)))))))).....))....... ( -24.20)
>DroSec_CAF1 9543 106 - 1
AGCCAAUUAAAAUUCUUUUCAAAUGAAUAGAAACUUAAAUAGUUUCAACACACCAUUGUUUACAUUUUCG--UAGUGGAUAUUUGGAAAGGGUUGAACGGCAUUAAGC
.(((......(((((((((((((((....((((((.....))))))......((((((............--)))))).)))))))))))))))....)))....... ( -27.80)
>DroSim_CAF1 541 106 - 1
AGCAAAUUAAAAUUCUUUUCAAAUGAAUAUAAACUUAAAUAGUUUCAACACACCAUUGUUUACAUUUUCG--UAGUGAAUAUUUGGAAAGGGUUGAACGGCAUUAAGC
.((.......(((((((((((((((.....(((((.....)))))...(((((...((....)).....)--).)))..))))))))))))))).....))....... ( -18.70)
>DroEre_CAF1 9302 106 - 1
AGCAAAUUAAAAUUCUUGUAAAAUGAAUAGAAACUUAAAUAGUUUCAACACGCCAUUGUUUACAUUUUCG--UAGUGAAUAUUUGGAAAGGGUUGGACGGCAUUAAGC
.((.......(((((((............((((((.....))))))......(((.(((((((.......--..)))))))..))).))))))).....))....... ( -18.80)
>DroYak_CAF1 9820 106 - 1
AGCAAAUUAAAAUUCUUUUAAAAUGAAUUGAAACUUAAAUAGUUUCAACACACCAUUGUUUACAUUUUCG--CAGUGAAUAUUUGGAAAGGGUUGAACGGCAUUAAGC
.((.......(((((((((.(((((..((((((((.....)))))))).....((((((..........)--)))))..))))).))))))))).....))....... ( -21.50)
>consensus
AGCAAAUUAAAAUUCUUUUCAAAUGAAUAGAAACUUAAAUAGUUUCAACACACCAUUGUUUACAUUUUCG__UAGUGAAUAUUUGGAAAGGGUUGAACGGCAUUAAGC
.((.......((((((((((((((.....((((((.....))))))...........((((((...........)))))))))))))))))))).....))....... (-18.16 = -19.00 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:23 2006