Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,645,495 – 15,645,585 |
Length | 90 |
Max. P | 0.543794 |
Location | 15,645,495 – 15,645,585 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 80.45 |
Mean single sequence MFE | -23.52 |
Consensus MFE | -16.12 |
Energy contribution | -16.38 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.05 |
Mean z-score | -1.58 |
Structure conservation index | 0.69 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543794 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15645495 90 + 22224390 CUGGAGAUCGCAGUCAC-ACACAGAUCC-AUUGAUCUGAUAAAGGACAUGACUUCCGUUGCAAAAUUGUGCCCAGAGUUAUGGCACCCGAAA ..((((.(((..(((..-...((((((.-...))))))......))).))).))))...........(((((.........)))))...... ( -21.30) >DroSec_CAF1 1984 91 + 1 CUGGAGGUCACAGUCACCACACAGAUCC-AUCGAUCUGAUUAAGGACCUGACUUCCGUUGCAAAAUUGUGGCCAGAGUUAUGGCACCCGAAA ..((((((((..(((......((((((.-...))))))......))).)))))))).........(((.(((((......)))).).))).. ( -29.00) >DroEre_CAF1 1965 80 + 1 CUGGGG-U-----------CACAGAUCCAAACCAUCUGAUAAAGGACCUGACUUCCGUUGCGAAAUCGUGGCCAGAGUUAUGGCACCCGAAA .(((((-(-----------(((((((.......)))))..........((((((..((..((....))..))..)))))))))).))))... ( -24.80) >DroYak_CAF1 2123 73 + 1 -------------------CACAGAUCCGAACCAUCUGAUAAAGGACCUGACUUCCGUUGCGAAAUCGUGGCCAGAGUUAUGGCACCCGAAA -------------------..(((((.......))))).....((.((((((((..((..((....))..))..)))))).))...)).... ( -19.00) >consensus CUGGAG_U___________CACAGAUCC_AACCAUCUGAUAAAGGACCUGACUUCCGUUGCAAAAUCGUGGCCAGAGUUAUGGCACCCGAAA .....................((((((.....)))))).....((.((((((((..(..(((....)))..)..)))))).))...)).... (-16.12 = -16.38 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:12 2006