Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,611,576 – 15,611,693 |
Length | 117 |
Max. P | 0.791137 |
Location | 15,611,576 – 15,611,693 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 79.09 |
Mean single sequence MFE | -39.60 |
Consensus MFE | -24.56 |
Energy contribution | -24.57 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.48 |
Mean z-score | -1.79 |
Structure conservation index | 0.62 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.791137 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15611576 117 + 22224390 GCCAAUGGAACUGGAAAAAGUGUGCUGCUGAAGACGAUUCUCGGCAUUUACACACCUAGUUCGGGACGGAUAAUCAGCUCCAAGACGGUUCCAUUCAAGUCGAAGGAUUUGGAUUCC .....(((((((((((...(((((.((((((.((....))))))))....)))))....)))((..(.(.....).)..))....))))))))((((((((....)))))))).... ( -38.00) >DroVir_CAF1 19192 117 + 1 GUGAACGGUUCCGGUAAAACGGUGCUGAUCAAGACGAUUCUGGGCGCCUAUCCCCCCAGCGCGGGCAGCAUAAGCAGCUUUGGGAAGUACUCGUAUCAGUACAGUGAGCACGAUAAC .....((((((((......))((((((((....((((..(((((.......)))(((((.((..((.......)).)).))))).))...))))))))))))...)))).))..... ( -33.00) >DroSec_CAF1 25 117 + 1 GCCAAUGGAACUGGGAAAAGUGUGCUGCUGAAGACGAUUCUCGGCAUUUACACACCCAGUUCGGGACGGAUAAUCAGCUCCAAGAGGGUUCCAUACAAGUCGAAGGACUUGGAAUCC .((....((((((((....(((((.((((((.((....))))))))..))))).)))))))).))..(((........)))....((((((((....((((....)))))))))))) ( -44.00) >DroSim_CAF1 16 117 + 1 GCCAAUGGAACUGGGAAAAGUGUGCUGCUGAAGACGAUUCUCGGCAUUUACACACCCAGUUCGGGACGGAUAAUCAGCUCCAAGAGGGUUCCAUACAAGUCGAAGGACUUGGAAUCC .((....((((((((....(((((.((((((.((....))))))))..))))).)))))))).))..(((........)))....((((((((....((((....)))))))))))) ( -44.00) >DroEre_CAF1 26 117 + 1 GCCAACGGAACCGGGAAAACUGUGCUGUUGAAGGCGAUCCUCGGAAUUUACACUCCCAGUUCGGGACGCAUAAUCACCUCCAACAAGGUGCCAUUCAAGUCGGAAGGCUCGGAAGCC ..((((((...(((.....)))..))))))..(((..(((..((.........((((.....))))........(((((......))))))).....((((....)))).))).))) ( -34.50) >DroYak_CAF1 25 117 + 1 GCCAAUGGAACUGGGAAAACUGUGCUGCUGAAGGCGAUUCUCGGUAUAUACACGCCCAGUUCGGGACGCAUAAUCACCUCCAACAGGGUGCCAUUCAAGUCGAAGGGCUUGGAUGCC ((...(.((((((((.....(((((((..(((.....))).)))))))......)))))))).)...)).....(((((......))))).((((((((((....)))))))))).. ( -44.10) >consensus GCCAAUGGAACUGGGAAAACUGUGCUGCUGAAGACGAUUCUCGGCAUUUACACACCCAGUUCGGGACGCAUAAUCAGCUCCAAGAGGGUUCCAUACAAGUCGAAGGACUUGGAAUCC .......((((((((.....((((.((((((.((....))))))))..))))..))))))))(((((....................)))))...((((((....))))))...... (-24.56 = -24.57 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:38 2006