Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,608,978 – 15,609,098 |
Length | 120 |
Max. P | 0.793918 |
Location | 15,608,978 – 15,609,098 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.64 |
Mean single sequence MFE | -40.20 |
Consensus MFE | -31.04 |
Energy contribution | -29.97 |
Covariance contribution | -1.06 |
Combinations/Pair | 1.28 |
Mean z-score | -1.84 |
Structure conservation index | 0.77 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.793918 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15608978 120 + 22224390 CGGGGUCUUAGCAAGACCGAGGCCAAGCUAGAGGCUAAAGCACUUCUUCGAUAUCUAAAGCUUGAGGAUUGGGAAAAGACUCUGGUUAAUGACCUGACCAUUGGACAGCGGAGAGUGCUG ...(((((.....)))))..((((........))))..((((((.(((((...(((((.....(((..((.....))..)))((((((......)))))))))))...))))))))))). ( -39.40) >DroSec_CAF1 7067 120 + 1 CGGGGUCUCAGCAAGAUCAAGGCCAAGCUAGAGGCUAAAGCACUUCUUCGAUAUCUAAAGCUUGAGGAUUGGGAAAAGUCUCCGGUCAAUGAGCUGACCAUCGGGCAACGGAGCGUGCUG ...(((((((((..............))).))))))..(((((((((.((((......((((((..((((((((....)).))))))..))))))....))))(....))))).))))). ( -36.34) >DroSim_CAF1 7027 120 + 1 CGGGGUCUCAGCAAGAUCAAGGCCAAGCUAGAGGCUAAAGCACUUCUUCGAUAUCUAAAGCUUGAUGGUUGGGAAAAGUCUCCGGUCAAUGAGCUGACCAUCGGGCAGCGGAGAGUGCUG ...(((((((((..............))).))))))..((((((.(((((.........(((((((((((.(((......)))(((......))))))))))))))..))))))))))). ( -41.44) >DroEre_CAF1 7062 120 + 1 CGGGGUCUCAAGAAGAUUGAGGCCCAGCGAGAGGCUAAAACAUUUCUCCGAUAUCUAAAGUUCGAGGAUUGGGAAAACACUCCGGUUAGUGAACUGACCAUGGGACAGAGGAGAGUGGUG ..(((((((((.....)))))))))(((.....)))....((((.(((((....)....((((..(((.((......)).)))((((((....))))))...))))...))))))))... ( -43.60) >consensus CGGGGUCUCAGCAAGAUCAAGGCCAAGCUAGAGGCUAAAGCACUUCUUCGAUAUCUAAAGCUUGAGGAUUGGGAAAAGACUCCGGUCAAUGAGCUGACCAUCGGACAGCGGAGAGUGCUG ...(((((.....)))))..((((........))))..((((((.(((((...(((..((((((..(((((((.......)))))))..)))))).......)))...))))))))))). (-31.04 = -29.97 + -1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:35 2006