Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,594,336 – 15,594,451 |
Length | 115 |
Max. P | 0.703215 |
Location | 15,594,336 – 15,594,451 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 98.70 |
Mean single sequence MFE | -27.80 |
Consensus MFE | -26.80 |
Energy contribution | -27.04 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.88 |
Structure conservation index | 0.96 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.703215 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15594336 115 + 22224390 CAACCGUCGGUAGUUUUUCGCGUACCGCAACCGCACACACAUUUGUGCCCGUGUUAAAAUUACUCACAGAGUAAACAUUAGU-GUAUGAGUAAUUUCCCAAUAUCUAAUGUUGCUC .....((.(((((((((.((((....((....)).((((....))))..))))..))))))))).)).((((((.(((((((-((..(((....)))...))).)))))))))))) ( -27.90) >DroSec_CAF1 4562 115 + 1 CAACCGUCGGUAGUUUUUCGCGUACCGCAACCGCACACACAUUUGUGCCCGUGUUAAAAUUACUCACAGAGUAAACAUUAGU-GUAUGAGUAAUUUCCCAAUAUCUAAUGUCGCUC .....((.(((((((((.((((....((....)).((((....))))..))))..))))))))).)).((((..((((((((-((..(((....)))...))).))))))).)))) ( -26.00) >DroEre_CAF1 4489 115 + 1 CAACCGUCGGUAGUUUUUCGCGUACCGCAACCGCACACACAUUUGUGCCCGUGUUAAAAUUACUCACAGAGUAAACAUUAGU-GUAUGAGUAAUUUCCCAAUAUCUAAUGUUGCUC .....((.(((((((((.((((....((....)).((((....))))..))))..))))))))).)).((((((.(((((((-((..(((....)))...))).)))))))))))) ( -27.90) >DroYak_CAF1 4702 116 + 1 CAACCGUCGGUAGUUUUUCGCGUACCGCAACCGCACACACAUUUGUGCCCGUGUUAAAAUUACUCACAGAGUAAACAUUAGUGGUAUGAGUAAUUUCCCAACAUCUAAUGUUGCUC .....((.(((((((((.((((....((....)).((((....))))..))))..))))))))).)).((((((.((((((((....(((....)))....)).)))))))))))) ( -29.40) >consensus CAACCGUCGGUAGUUUUUCGCGUACCGCAACCGCACACACAUUUGUGCCCGUGUUAAAAUUACUCACAGAGUAAACAUUAGU_GUAUGAGUAAUUUCCCAAUAUCUAAUGUUGCUC .....((.(((((((((.((((....((....)).((((....))))..))))..))))))))).)).((((((.((((((......(((....))).......)))))))))))) (-26.80 = -27.04 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:22 2006