Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,683,765 – 1,683,884 |
Length | 119 |
Max. P | 0.517192 |
Location | 1,683,765 – 1,683,884 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.91 |
Mean single sequence MFE | -34.40 |
Consensus MFE | -25.09 |
Energy contribution | -25.15 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.07 |
Mean z-score | -1.43 |
Structure conservation index | 0.73 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.517192 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1683765 119 + 22224390 CGG-GGAUCCGAUACCCGCCUCCCUUUCGCAAACGUGUUUGCAAACGGAUCGUACACGAAAGUCGGGGCCGUAUGCCAAGUGUACAUAUACAUAUGUAUGUAUGUACAUACAAAUCUGUC .((-(((..((.....))..)))))...(((((....)))))..((((((.(((((((.....)..(((.....)))..)))))).........(((((((....))))))).)))))). ( -35.20) >DroSec_CAF1 24107 112 + 1 CGGGGGAUCCGAUACCCGCCUCCCUUUCGCAAACGUGUUUGCAAACGGAUCGUACACGAAAGUCGGGGCCGUGUGCCAAGUGUACAUACACAUAU--------GUACAUACAAAUAUGUC .((((((..((.....))..))))))......(((((((((((.((((.(((...((....)))))..)))).)))...(((((((((....)))--------))))))..)))))))). ( -35.20) >DroSim_CAF1 17935 112 + 1 CGGGGGAUCCGAUACCCGCCUCCCUUUCGCAAACGUGUUUGCCAACGGAUCGUACACGAAAGUCGGGGCCGUGUGCCAAGUGUACAUACACAUAU--------GUACAUACAAAUAUGUC .((((((..((.....))..))))))......(((((((((...((((.(((...((....)))))..)))).......(((((((((....)))--------)))))).))))))))). ( -33.60) >DroEre_CAF1 19653 101 + 1 CGGGGUAUGCGAUACCCGCCUCCCUUUCGCAAACGUGUUUGCAAGCGGAUCGUACACGAAAGUCGGGGCCGUAUGCCAAGUGCAUAUAUGUAU----------------AUAUGUCU--- ...((((((((...((((.(((((((..(((((....)))))))).)))(((....)))..).))))..))))))))....(((((((....)----------------))))))..--- ( -33.60) >consensus CGGGGGAUCCGAUACCCGCCUCCCUUUCGCAAACGUGUUUGCAAACGGAUCGUACACGAAAGUCGGGGCCGUAUGCCAAGUGUACAUACACAUAU________GUACAUACAAAUAUGUC .(((..........)))(((((.((((((...(((.(((((....))))))))...))))))..))))).((((((.....))))))................................. (-25.09 = -25.15 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:17 2006