Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,572,626 – 15,572,746 |
Length | 120 |
Max. P | 0.999741 |
Location | 15,572,626 – 15,572,746 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.83 |
Mean single sequence MFE | -51.04 |
Consensus MFE | -46.88 |
Energy contribution | -46.16 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.18 |
Mean z-score | -2.44 |
Structure conservation index | 0.92 |
SVM decision value | 3.98 |
SVM RNA-class probability | 0.999741 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15572626 120 + 22224390 GGCGCCGCAGCCGAUGAGGUGGCUUCACUGGCCAACCAUCGGCGGCGGUCCAUCAUCCACUGCGUCUGCGUCUGCUGGCGCGGAAUUCGAAGUCCUCCAAGGACCAUCUGCCCGAAUCUC ((((((...(((((((.(.(((((.....))))).)))))))))))(((((.......(((.((((((((((....))))))))...)).))).......)))))....)))........ ( -52.94) >DroSec_CAF1 4210 120 + 1 GGCGCCGCAGCCGAUGAGGUGGCUUCACUGGCCAACCAUCGGCGCCGGUCCAUCAUCCACUGCGUCUGCGUCUGCUGGCGCGGAAUUCGAAGUCCUCCCAGGACCAUCUGCCCCAAUCUC (((...((.(((((((.(.(((((.....))))).)))))))))).(((((.......(((.((((((((((....))))))))...)).))).......)))))....)))........ ( -50.54) >DroSim_CAF1 4020 120 + 1 GGCGCCGCAGCCGGUGAGGUGGCUUCACUGGCCAACCAUCGGCGCCGGUCCAUCAUCCACUGCGUCUGCGUCUGCUGGCGCGGAAUUCGAAGUCCUCCCAGGACCAUCUGCCCCAAUCUC (((((((..((((((((((...)))))))))).......)))))))(((((.......(((.((((((((((....))))))))...)).))).......)))))............... ( -52.54) >DroEre_CAF1 4271 120 + 1 GGCGCUGCAGCCGAUGAGGUAGCUUCACUGGCUAUCCAUCGACGCCGGCUCAUCAUCCACUGCGUCUGCAAUUGCUGGCGUGGAAUUCGAAGUCCUCCCUGGACCAUCGGCCAAAAUCUC (((((....))(((((.(((((((.....))))))))))))..)))(((..........(..((((.((....)).))))..)....(((.((((.....))))..))))))........ ( -46.80) >DroYak_CAF1 4449 120 + 1 GGCGCCGCAGCCGAUGAGGUGGCUUCACUGGCUACCCAUCGGCGCCGGCUCAUCAUCCACUGCGUCUGCAGCUGCUGGCGCUGAAUUCUAAGUCCUCCCAGGACCAUCUGCCCGAAUCUC (((((((..(((((((.(((((((.....))))))))))))))..))))............(((((.((....)).)))))..........((((.....)))).....)))........ ( -52.40) >consensus GGCGCCGCAGCCGAUGAGGUGGCUUCACUGGCCAACCAUCGGCGCCGGUCCAUCAUCCACUGCGUCUGCGUCUGCUGGCGCGGAAUUCGAAGUCCUCCCAGGACCAUCUGCCCCAAUCUC (((((((..(((((((.(.(((((.....))))).))))))))..))))..........(((((((.((....)).)))))))........((((.....)))).....)))........ (-46.88 = -46.16 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:16 2006