Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,567,596 – 15,567,691 |
Length | 95 |
Max. P | 0.689668 |
Location | 15,567,596 – 15,567,691 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 91.68 |
Mean single sequence MFE | -19.46 |
Consensus MFE | -15.11 |
Energy contribution | -15.59 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.19 |
Mean z-score | -1.66 |
Structure conservation index | 0.78 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.689668 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15567596 95 - 22224390 ACUACACGUGCAUUUGCCGCAGUAUACACUGCAGUAAGCCAGUGGUAUGUUUGGAAAUCAGUUGUAAAUACAAAUAAACUACCCAAUUGAUAUUA .(((.((((((.(((((.(((((....))))).)))))......)))))).)))..((((((((...................)))))))).... ( -21.21) >DroSec_CAF1 3158 95 - 1 ACUACACGUGCAUUUGCCGCAGUAUACACUGCAGUAAACCAGUGGUAUGUUUGGAAAUCAGUUUUAAAUAUAAAUAAACUAUCCAAUUGAUAUUA ....(((.((..(((((.(((((....))))).))))).))))).(((((((((((.....))))))))))).......((((.....))))... ( -18.60) >DroSim_CAF1 3138 95 - 1 ACUACACGUGCAUUUGCCGCAGUAUACACUGCAGUAAACCAGUGGUAUGUUUGGAAAUCAGUUUUAAAUAUAAAUAAACUAUCCAAUUGAUAUUA ....(((.((..(((((.(((((....))))).))))).))))).(((((((((((.....))))))))))).......((((.....))))... ( -18.60) >DroEre_CAF1 3110 95 - 1 ACUACACGUGCAUUUGCCGCAGCUUACACUGCAGUAAGCCAGUGGUAAGUUUGGAAAUUAAUUGUAAAUAUAAAUAAACCAACCAAUUGAUAUUA ...........(((((((((.((((((......))))))..)))))))))......((((((((...................)))))))).... ( -20.11) >DroYak_CAF1 3090 95 - 1 ACUACACGUGCAUUUGCCGUAGUUUACACUGCAGUACACGAGUGGUAAGUUUGAAAAUAAAUUGUAAAUAUAAAUAAACCAACCAAUUGGUAUUA (((((.((((....(((.(((((....))))).))))))).)))))...............................(((((....))))).... ( -18.80) >consensus ACUACACGUGCAUUUGCCGCAGUAUACACUGCAGUAAACCAGUGGUAUGUUUGGAAAUCAGUUGUAAAUAUAAAUAAACUAACCAAUUGAUAUUA .(((.((((((.(((((.((((......)))).)))))......)))))).)))..((((((((...................)))))))).... (-15.11 = -15.59 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:12 2006