Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,534,656 – 15,534,762 |
Length | 106 |
Max. P | 0.772320 |
Location | 15,534,656 – 15,534,762 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 78.77 |
Mean single sequence MFE | -29.45 |
Consensus MFE | -20.40 |
Energy contribution | -20.57 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.33 |
Mean z-score | -1.44 |
Structure conservation index | 0.69 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.772320 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15534656 106 - 22224390 UAAUGCAACC----AU---UUCCAGUGCAAAGGACCCUCCAUGGAGCCCACCCUGCACUCGGACAACGUUCUUCUCACCGAGCGCUUGUCGAAACACUGGCGAACCUACCAGC ..........----.(---(((.((((((..((...(((....)))....)).))))))..((((((((((........))))).)))))))))..((((........)))). ( -27.40) >DroVir_CAF1 14327 107 - 1 CGAUA-AACGAUGC-----UUUCAGUGCAAAGGACCCUCCAUGGAGCCAACGCUCUUCUCAGAUAACGUGCUGCUGACGGAACGCCUAUCCAAAUAUUGGCGUAAAUAUCAAU .((((-.......(-----(.((((((((..((.....))..(((((....)))))............))).))))).)).(((((............)))))...))))... ( -26.50) >DroSec_CAF1 11871 106 - 1 UAAUAUAACC----AU---UUCCAGUGCAAAGGACCCUCCAUGGAGCCCACCCUGCACUCGGACAACGUUCUUCUCACCGAGCGCUUGUCCAAGCACUGGCGAACCUACCAGC ..........----.(---(.(((((((..(((...(((....))).....)))......(((((((((((........))))).))))))..))))))).)).......... ( -32.70) >DroEre_CAF1 12119 106 - 1 UAAUGUAACC----AC---UUCCAGUGUAAAGGACCCUCCAUGGAACCCACUCUCCACUCGGACAACGUCCUGAUCACCGAGCGCUUGUCAAAGCACUGGCGAAGUUACCAGC ....(((((.----..---..(((((((...((.....)).((((........))))....(((((((..(........)..)).)))))...)))))))....))))).... ( -26.90) >DroYak_CAF1 10785 106 - 1 UGAUAUAACC----AC---UUGCAGUGCAAGGGACCCUCCAUGGAGCCCACUCUCCACUCGGACAACGUUCUGCUCACCGAGCGCUUGUCGAAGCACUGGCGAACUUACCAGG ..........----..---(((((((((..(((..((.....))..)))............((((((((((........))))).)))))...))))).)))).......... ( -31.70) >DroAna_CAF1 15484 109 - 1 GAUUAUAACC----UUCCGUUUCAGUGCAAGGGACCCUCAAUGGAGCCCACACUCUUCUCCGACAAUGUUCUGGUCACCGAGCGGCUGUCGAAGUUCUGGCGCGGCUACCAGC ..........----..((((.((((.((..(((..((.....))..)))...........(((((.(((((.(....).)))))..)))))..)).)))).))))........ ( -31.50) >consensus UAAUAUAACC____AU___UUCCAGUGCAAAGGACCCUCCAUGGAGCCCACCCUCCACUCGGACAACGUUCUGCUCACCGAGCGCUUGUCGAAGCACUGGCGAACCUACCAGC .....................(((((((...((..((.....))..)).............((((((((((........))))).)))))...)))))))............. (-20.40 = -20.57 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:59 2006